Query= MSMg01no050_n07.b1 MSMg01no050_n07.b1 CHROMAT_FILE:
MSMg01no050_n07.b1 PHD_FILE: MSMg01no050_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:40 2005
(764 letters)
>mm_chr13_115361842_115363007
Length = 1166
Score = 1361 bits (704), Expect = 0.0
Identities = 738/750 (98%), Gaps = 2/750 (0%)
Strand = Plus / Minus
Query: 17 gaattccagagatacttcccaaggcactgagcatgcactcgaagatccatgggcaagggg 76
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 966 gaattccagagatacttcccaaggcacggagcatgcactcgaagatccatgggcaagggg 907
Query: 77 attgcctagcac--gtttatcgtggcctgggatggtcgtttaaagccaaagatgtggggt 134
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 attgcagagcacatgtttatcgtggcctgggatggtcgtttaaagccaaagatgtggggt 847
Query: 135 tggaacattttaaaaaggactacagaactgcctagcgtttcctattctggctcaggcata 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tggaacattttaaaaaggactacagaactgcctagcgtttcctattctggctcaggcata 787
Query: 195 tgaagcagagatgccacaaggagaacacgacaatgaccctggcatacttatgccaagtct 254
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tgaggcagagatgccacaaggagaacacgacaatgaccctggcatacttatgccaagtct 727
Query: 255 atgattctacaatttgatctcacagctgagtgagttctcactacctttaaaataccagag 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atgattctacaatttgatctcacagctgagtgagttctcactacctttaaaataccagag 667
Query: 315 cattaagctaaatgtcgacttgggggaatccagcatccatgtccatctgtcagtatctca 374
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 666 cattaagttaaatgtcgacttgggggaatccagcgtccatgtccatctgtcagtatctca 607
Query: 375 agtttctctcagggaagcactccaaatattgaataaaattgttttcgaccagtggatcca 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agtttctctcagggaagcactccaaatattgaataaaattgttttcgaccagtggatcca 547
Query: 435 tgcagattaccaagcagttaaaaaacacaacatgtcatgaacttgaataagtaagaaaaa 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tgcagattaccaagcagttaaaaaacacaacatgtcatgaacttgaataagtaagaaaaa 487
Query: 495 ggcaatacactggcatctatctgaaccctgttccttacgaatttgggaggtccagctttg 554
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 486 ggcaatacactggcatctatctgaaccctgttccttaggaatttgggaggtccagctttg 427
Query: 555 gtttcttttgcattcctttgcagtatttgtaaagaaagtaacttattctcattctgatgt 614
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtttcctttgcattcctttgcagtatttgtaaagaaagtaacttattctcattctgatgt 367
Query: 615 aaacaaggtatcagggggcgatgcttgacctacttaagagaacaaactgtttccaagtac 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaacaaggtatcagggggcgatgcttgacctacttaagagaacaaactgtttccaagtac 307
Query: 675 gatgtaatagcatttctttgcatataaacaacctgttgtttcaatcgccatcttatctct 734
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gatgtaatagcatttatttgtatataaacaacctgttgtttcaatcgccatcttatctct 247
Query: 735 gaacaaaacacagcaggacttctctggcct 764
||||||||||||||||||||||||||||||
Sbjct: 246 gaacaaaacacagcaggacttctctggcct 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 764
Length of database: 1166
Length adjustment: 10
Effective length of query: 754
Effective length of database: 1156
Effective search space: 871624
Effective search space used: 871624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no050_n07.g1 MSMg01no050_n07.g1 CHROMAT_FILE:
MSMg01no050_n07.g1 PHD_FILE: MSMg01no050_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:40 2005
(694 letters)
>mm_chr13_115342563_115343656
Length = 1094
Score = 1311 bits (678), Expect = 0.0
Identities = 690/694 (99%)
Strand = Plus / Plus
Query: 1 cttggcactcttggagggagcaggaagcttgggcagcaggacactcaccaaaggactcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggcactcttggagggagcaggaagcttgggcagcaggacactcaccaaaggactcac 260
Query: 61 tatttctttttggttttaaaaataaaacattcttacaaagtaagcctctggcttccaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttctttttggttttaaaaataaaacattcttacaaagtaagcctctggcttccaaac 320
Query: 121 cacagcatttctgaagctggggttttcaggaaaccgctggatttctgaatgagatgttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagcatttctgaagctggggttttcaggaaaccgctggatttctgaatgagatgttgt 380
Query: 181 taagtctccccgttgttttcaacggtcgtgtgctttttcagaacactctgatgtctatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtctccccgttgttttcaacggtcgtgtgctttttcagaacactctgatgtctatta 440
Query: 241 ggggagccgttgcatgcaaggactagtgaagacgctaatgcagaatgaaaggcaagggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggagccgttgcatgcaaggactagtgaagacgctaatgcagaatgaaaggcaagggat 500
Query: 301 gcatctcttctttatttgggtttcaggcctttcctttgatacaatgggggactaaataag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatctcttctttatttgggtttcaggcctttcctttgatacaatgggggactaaataag 560
Query: 361 atccataagtgttctgtcgcctctttcagaagtatctgtctgagtttcttttcctgtggc 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccataagtgttctgtcgactctttcagaagtatctgtctgagtttcttttcctgtggc 620
Query: 421 tagataaaacaggctgacaaaatgaataatgcttttttccccctcagttttctttcttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagataaaacaggctgacaaaatgaataatgcttttttccccctcagttttctttcttct 680
Query: 481 ttttgtacaggatctcagcccagggaatggttccactcaccgtggatgacaggtcgtccc 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 ttttgtacaggatctcagcccagggaatggttccactcacagtggatgacaggtcgtccc 740
Query: 541 atttcaaacaaccccgggcaagatcatgccccacagaactgcctagagacccttcttaca 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 741 atttcaaacaaccccgggcaagatcatgctccacagaactgcctagagacccttcctaca 800
Query: 601 tgtgattctagatcttttcaagaggacagctgacattcatcatggcagtatcctattgca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtgattctagatcttttcaagaggacagctgacattcatcatggcagtatcctattgca 860
Query: 661 gaccatcatgtggatggaaagctttggtctttgg 694
||||||||||||||||||||||||||||||||||
Sbjct: 861 gaccatcatgtggatggaaagctttggtctttgg 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
