BAC Information

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BAC

Clone NameMSMg01-051A05
Chromosome13 (Build37)
Map Location 107,220,395 - 107,220,954
singlet/doubletsinglet
Overlap genenone
Upstream geneHtr1a, EG668025, Olfr717-ps1
Downstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366, Apoo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051A05.T7 (MSMg01no051_a05.b1)MSMg01-051A05.TJ (MSMg01no051_a05.g1)
ACCAG279913AG279914
length1,2751,238
length of high quality
(start - end)		477 (38 - 514)561 (81 - 641)
definitionCHROMAT_FILE: MSMg01no051_a05.b1 PHD_FILE: MSMg01no051_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:05 2005CHROMAT_FILE: MSMg01no051_a05.g1 PHD_FILE: MSMg01no051_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTTTTTTTNNNGTCAGTGGGCGCTAAGACTCCTAAGGGAGAGGATCCG
CGGAATTCTTTGTTCAGTTCTGAGCCCCTTTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCTCTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
ACATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGCTTTAGCTCCCTTGTCGAAGATCCA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCACTTCTATTCCATT
GCTCTACTTGTCTGCCTCTATACCAGTACCCTGCAGTTTCTATCCCAATT
GCCCTGTAGTAAAGCTTTAGGTCTGGTATGGTGCTTCCGCCAGAAGTTCT
TTTATCCTTGCCAAGACTTTTTGCTATCCTAGGCTTTTTGTTATTCTAGA
TCTCCTTGCAAATTGCTCCTTCCCATTCGTTTGACTATTTTGACTTGGAA
TTTTTGAATGGGTATTGCTTTGCAACCTGTTTCCTTGTTTTTGTGCTTTA
TTATCCTTTTTTACTCCTTCCCTTCCTGTCCTTCTCTCTGTCTCAGCTTT
CATTTTTCCCCTCTTTCTGAATATTTTTCTCTATCTTTCTTTCCTTCAAT
AATATTTCTATTTCTTTTTCTCTAATCTTTTTTTTTTCTTTTCTTCTTTT
TTTTTTTCCTTTTTTTCTACCTTCTTTTTTTTTTTTATTCTCCTCTTCTT
TTCTCTCTCTTTCTATTTTTCTTTACTATTCATTTTTTTATTTTTCTTCT
AATTTTTTTTCTCTTTTCTTTTCTATATTCTCTATCTTCTTTTTTTTTCT
TCTCTTTACTATCTTTTTCCTATTATTTTTATTTTATTCCTCTTTCTTTT
CTNATTCCTTTTAATATCTATTTANTTCTTATCCTCTTTTTCTTTNTCTC
TCTCTCCTATATTTGTATTTTTTTT

NNTTTTGTTTTTNNTATACACGGNAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTTGGTCTTTCTGCAC
TATCAGAGGCAGAAAAATGCTCTTCAGGAGTTACCTGATGCTGAAGAAAC
ATGGGGCATTGTTTTCTCTCTGTAAAGTTCAGCAAAGGAAAGACTAGGTA
TGGCCTGCCATTTTTCTAATATCATAATATGCAAAGCACAAGAAGAATTG
GAAAGGAGGATTACTCCAGGGAAGGGGAAAGATCAAATGGTTAATTAAAA
TTCATTTTATAAAATGATAGCTTCCACAGATACTAACTTCTGAGTAATTT
AACATCCTGTTGAGATCACAATTATTCCTAAGGCAGGAGAGAGAACAATC
TTACATGAAAAGAGAATATGGAAAAACAACTGTGACTGAATAATGAGAAC
TTTTAAGATATTTAATGTAATTTACTCTTCATATCAGATAAATGATTTTT
TGATGTGATAAGCTAATGCATGATTTATTTCTAGGCACTATATATTTACT
GAATTTCAAAGAACCCATCTACCTGATTGAACCACTAAATCTATTTCTTT
TATTTTTAAGTGTCTTTAATAGATGGTTCCACAAATGTACTAGCACTCCA
TACTGAAGGTTTATAGTATCAGCAATATAACCTATTAAATTTGAAACGGG
TCCACCCTTTACCTCTACGTTATTGATATTTTATTGAAAAGCAGATACCG
AACATATTGACTTTTCTCCTTAACCTGATGCTATTAATTTGATGATGTAC
CTGAATACATAGAAAATGCATACAATATAGATACACATATTTTATATCTT
GGTCTTGTCCTTGTTTTCTTCCCCTATATATGTATATCTTCCTCCCTTTA
CCCTGTCCATTCTTTAAATTTCTTCTTTTCATGCTGTCTCATTTTTGATA
ATTCTCTTAGTATTTTTTCCCCTAACTCCTTTTTTTTCTTTTATCTTAGT
TTCCCTCTTATTCCCCTATTCTTTTTTCTCTCTTTACCTCTTTATATGTC
TTTCTACTCTTTTACTTCCCTTCCTTTTTTCTTCTTTTTTGTATTATTCT
ATTTTCTCTCTTATTATCTCTTTTTATTCTCTCTCTCCTCTATCTCTCTT
CTTTGTTCCTATGCATTTTCTTCTATCTCTTTGTGTCTCCTTCTCTTCTA
CATTAACTCCTTCCTCTATTTATATCGTTATGTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_a05.g1 MSMg01no051_a05.g1 CHROMAT_FILE:
MSMg01no051_a05.g1 PHD_FILE: MSMg01no051_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:05 2005
         (561 letters)



>mm_chr13_107220194_107221154
          Length = 961

 Score = 1060 bits (548), Expect = 0.0
 Identities = 557/560 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   tcttttggtctttctgcactatcagaggcagaaaaatgctcttcaggagttacctgatgc 61
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 202 tcttttggtctttctgcactatcagaggcagaaaaatgctattcaggagttacctgatgc 261

                                                                       
Query: 62  tgaagaaacatggggcattgttttctctctgtaaagttcagcaaaggaaagactaggtat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgaagaaacatggggcattgttttctctctgtaaagttcagcaaaggaaagactaggtat 321

                                                                       
Query: 122 ggcctgccatttttctaatatcataatatgcaaagcacaagaagaattggaaaggaggat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggcctgccatttttctaatatcataatatgcaaagcacaagaagaattggaaaggaggat 381

                                                                       
Query: 182 tactccagggaaggggaaagatcaaatggttaattaaaattcattttataaaatgatagc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tactccagggaaggggaaagatcaaatggttaattaaaattcattttataaaatgatagc 441

                                                                       
Query: 242 ttccacagatactaacttctgagtaatttaacatcctgttgagatcacaattattcctaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttccacagatactaacttctgagtaatttaacatcctgttgagatcacaattattcctaa 501

                                                                       
Query: 302 ggcaggagagagaacaatcttacatgaaaagagaatatggaaaaacaactgtgactgaat 361
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 502 ggcaggagagagaacaatcttacatgaaaagagaaaatggaaaaacaactgtgactgaat 561

                                                                       
Query: 362 aatgagaacttttaagatatttaatgtaatttactcttcatatcagataaatgatttttt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aatgagaacttttaagatatttaatgtaatttactcttcatatcagataaatgatttttt 621

                                                                       
Query: 422 gatgtgataagctaatgcatgatttatttctaggcactatatatttactgaatttcaaag 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gatgtgataagctaatgcatgatttatttctaggcactatatatttactgaatttcaaag 681

                                                                       
Query: 482 aacccatctacctgattgaaccactaaatctatttcttttatttttaagtgtctttaata 541
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aacccatctacctgattgaatcactaaatctatttcttttatttttaagtgtctttaata 741

                               
Query: 542 gatggttccacaaatgtact 561
           ||||||||||||||||||||
Sbjct: 742 gatggttccacaaatgtact 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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