BAC Information

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BAC

Clone NameMSMg01-051C15
Chromosome13 (Build37)
Map Location 70,275,983 - 70,276,164
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291
Downstream gene4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051C15.T7 (MSMg01no051_c15.b1)MSMg01-051C15.TJ (MSMg01no051_c15.g1)
ACCAG280017AG280018
length1,3341,350
length of high quality
(start - end)
182 (149 - 330)---
definitionCHROMAT_FILE: MSMg01no051_c15.b1 PHD_FILE: MSMg01no051_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:28 2005CHROMAT_FILE: MSMg01no051_c15.g1 PHD_FILE: MSMg01no051_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATTTTTTNTNNAGAAATTCGGCGCTATAGACTACTATAGGGAGAGGATC
CGCGGAATTCATTCTGCAGCTCAGCTCCCTTTGAAAGGAGCGAAGGCGCG
CATCATCATGTGTTGTTCGCATTTGATGCTGCAAATGCCCCTCAGGTTTT
TGCGTGTTGTCAGCTAAGCTACTACCCACTCAGTTCCATCCCTAGCTCTA
GAACGGGCTGTCAACATTCATAGGGGCAAACCTTCATGTCACTGTCTGGG
TTTGGACAGACTTACAGAATTGGAAATCTTTAAGGGGTGGCCACTGCAGT
GTCTTGATGACCACAAACGATCCTGGAATCAGGAAAAATATTAAGGAAAA
TGAAGAACATAAATCCTGAGGAACACCAGCAAGCTCCTGGTCGATCTGTA
CGAAACCCGTATTTTTTCCACACCGTAGAAGAGGCAATTCCTTTGTGTGC
TCATTCACTGACGGAGTATGTGTTAAGTATCATTCTCTAGCTTCTCGTGA
ATGAGTTGCTACTTTTTTTCTGTTTTTCATGTCTCTTCTCTTCTACTTTG
TCTTTTTTTGATTCTTGTTTTTTCTTCTCTTTTTACAGTTCTATTCTATC
CTTACCTTTTTTCTTTTTTTCTTTTTTTCTTTTATCATTTTTTTTTTTTT
CTCTCTTCTTTTCTCTTTCTCTTATTTTTCGTTTTCTTTTATTTTTATCT
TTTTTTTTTTTATTTCCTATTTCTTTTCTTCTTTTCTTTTTTTTTTTTTC
CTTTTTTCTTTTATTTTTTTTTTTTTTTCCTTTTTATATTTTTTTATTTT
TTCCCCTTTTTTTTTTTTTTTATTCTCTTTTTTTTTTTTCTTTTTATTCT
ATATTTCTTTTTTTTTTCTTTTTTTTTATTTTCTTTTTTTTTTTACTTTT
TATCTTTTTTATTCTTCTTTTTTTTTTTTTTCCTTCTCCTATTTCATTTC
TTTCTTTATTATTTATAATATTACTTTCTTTTTTTATATATATTGATTTT
TATCTTTCTTTTCTAATTTTTATTTATCTTTATTTTTTTTTATCTTTTCT
TCATCTTTTTTCTTTTCTTTTTCTTATTTTTTTTTATTCCTTCTTTCCTT
CCTTATTTTTGTTTATATTTTATTTCCTTTTTTCTTTGTTTATTTTATCT
TTTTACTATTTTTTAATCTTTTATCTATTCTGTTTATTTTTTTTTTCTTT
CTATTTTTTTCTTATTTTATTTTTTTCTTTTACTTTCTTTTTATTTCCTA
TTTGTTTATTTTTCTGTTTTTTATATTCTTTTTTTCTTTATATCTTATCC
TCTTTTTTTTATTTTTTCCCATTTTTTTATAATT
NGGGTTCTTTTTNTTAAGATGTGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXGACCTCTTAGCCTCGGCATAGGAG
GGAGAGAAGAAANCCTAGCCCCTTTAAGAGGACTATAACGCCGCCTCGGT
CCGGACGGAGCAGGGTCTTCGTTCCTGATGGTGGTCTCCTTAGGACATGC
TGGATTCCGTCTTGAATAATGGAAACTTTGCCGAATGTGTAATACATGTG
TGCATGACTATGAGGCGGCCAGCCCCGTTTCGGGATCGCACTGAAAACTG
CGAACCGTCCCTAGCCCTTCGAGCACAGGCCCTACAGCCTCTTTGGCCCT
GACAACAGGCCTGGGGGTCCCCACGATTTGTGTTTCTTCTCATTAGTCTG
ACGTGCCCCTTTTTTTTTTGCGCACCCGAAGCCCGGTAAGCACTTCGCTC
AGCTTTCCCCCCTCCTGTTTTCCCGCCCCCCGCCAGCGTCTCTTTTCCTC
CATAAAACATTCACCCCCTCTGTTTGTTCCCAGTATGTTGACTTCTGTCT
GCCTCCTCTTCTTCTTTCCTATACCCTTCTCTCTTCTTTTCCTCTTTTCC
TACTGTATTTTTCCTGCATTTTCCTTTTCTCACTTGTTTCGTTTTTTTCT
TTTCTTTTCCTCTATACTTTTTTTTTTTCTTTTTTTTTCTTTTTTTTCTT
TTCTCTTTGATTTTTTCTCTTTTCCCTTTTTTCTTCTTCTCCTGGCTTTA
TTTCTCTTTTTTTTCCCTCTTTCTTCTCTTTCCTTCCCTCTTCTTTTTTC
TTTTTCCTTTTTTTTTTTTTTTTTTTTTCTCCATCTTCCTTCCCTATTTT
CCCTTTTTTTCTTTCTTTTTCCTTTTATTTTTTTTTCTATTCTCTTTCTT
TCTCTTTTTTCTTTTTTTCCTTTCCTTTCTTTCTTTCTCTCTCCTACTTT
CCATTCTGTCCTTTTTTTTTTGTTTTTCTATCTCTCTTTTTCTTCTCCTT
TTATGCATTTTCTCTATTTTTTCTCTTCCTTCTCTCCTTCTCTTTACTCT
TCGTCTCTTCTCTTCTCTCTACTCTCTCTCTTTTTTCTTCTCATCTCTAT
ATTCTGTTTCCTTTTTTCTTCCTTCTCCTCCGATCACTTCATCTCTTCTA
TCTTCTTTCTCCTTTTCCCTTCCCTTCTTTACTTCTTTTCTTCATTTTCC
TTTCACTTTTCCTTCTCCCGTTTCTTTCTTATTCCTACTTTTTTCTACTC
TTTTTCTTCTCATCGTTTATCTCTTCTTTCTCTTATTCATACTCCTCTTT
TCTTATTCCTATNCTTTTTCGTTCCGTTTTATCTCTTCCTACTTCTTCTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_c15.b1 MSMg01no051_c15.b1 CHROMAT_FILE:
MSMg01no051_c15.b1 PHD_FILE: MSMg01no051_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:28 2005
         (182 letters)



>mm_chr13_70275783_70276364
          Length = 582

 Score =  352 bits (182), Expect = e-102
 Identities = 182/182 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgcgtgttgtcagctaagctactacccactcagttccatccctagctctagaacgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttgcgtgttgtcagctaagctactacccactcagttccatccctagctctagaacgggc 323

                                                                       
Query: 61  tgtcaacattcataggggcaaaccttcatgtcactgtctgggtttggacagacttacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgtcaacattcataggggcaaaccttcatgtcactgtctgggtttggacagacttacaga 263

                                                                       
Query: 121 attggaaatctttaaggggtggccactgcagtgtcttgatgaccacaaacgatcctggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 attggaaatctttaaggggtggccactgcagtgtcttgatgaccacaaacgatcctggaa 203

             
Query: 181 tc 182
           ||
Sbjct: 202 tc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)