Query= MSMg01no051_d04.b1 MSMg01no051_d04.b1 CHROMAT_FILE:
MSMg01no051_d04.b1 PHD_FILE: MSMg01no051_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:33 2005
(275 letters)
>mm_chr13_95141128_95141802
Length = 675
Score = 470 bits (243), Expect = e-137
Identities = 255/259 (98%)
Strand = Plus / Minus
Query: 13 caagcaagcattcttaactagattacacatcaaacaagcactcttaactgcatgcagctg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 caagcaagcattcttaactagattacacatcaaacaagcactcttaactgcatgcagctg 412
Query: 73 tcagtaaatactaacagtttctgtaagaaaagttaacagtctatatttaaccatgttaga 132
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 411 tcagtaaatactaacagtttctgttagaaaagttaacagtctatatttaaccatgttaga 352
Query: 133 ccttttaatcctcaaaatactcagagtagaggttcttcttctgctaccctcgtcctcatt 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ccttttaatcctcaaaatactcagagtagaggttcttcttctgctaccctcgtcctcatt 292
Query: 193 tcatcccccaaggaactccgaggccaggagccataggtaggctgctgagcacatgaactc 252
|| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 291 tcctcccccaaggaactccgaggccaggagcaataggtaggctgctgggcacatgaactc 232
Query: 253 tctgacaggctttcagacc 271
|||||||||||||||||||
Sbjct: 231 tctgacaggctttcagacc 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no051_d04.g1 MSMg01no051_d04.g1 CHROMAT_FILE:
MSMg01no051_d04.g1 PHD_FILE: MSMg01no051_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:33 2005
(309 letters)
>mm_chr13_95022619_95023325
Length = 707
Score = 582 bits (301), Expect = e-171
Identities = 307/309 (99%), Gaps = 2/309 (0%)
Strand = Plus / Plus
Query: 1 taactaacacatccacacaggttgttttacactcacttactccaccagctgaaaaagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taactaacacatccacacaggttgttttacactcacttactccaccagctgaaaaagagt 260
Query: 61 agttaaaatgtcccctatttaacttccatttaaacacttaagagaagtacaaaaaataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttaaaatgtcccctatttaacttccatttaaacacttaagagaagtacaaaaaataaa 320
Query: 121 tcatgctaccgtgcgagagtcggagaaagggttgtattcatcaagtcccggtggcacatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgctaccgtgcgagagtcggagaaagggttgtattcatcaagtcccggtggcacatt 380
Query: 181 tcttgtcacctgtgtgacagatgggtcctggaaaaagaattgaaagagaaaaaaatatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 381 tcttgtcacctgtgtgacagatgggtcctggaaaaagaattgaaagagaaaaaaa-a-at 438
Query: 241 atgagttaataattaagacacaattttgatatttacatactacttgctttatctgaacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atgagttaataattaagacacaattttgatatttacatactacttgctttatctgaacct 498
Query: 301 ttggtctca 309
|||||||||
Sbjct: 499 ttggtctca 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 707
Length adjustment: 9
Effective length of query: 300
Effective length of database: 698
Effective search space: 209400
Effective search space used: 209400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
