BAC Information

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BAC

Clone NameMSMg01-051F08
Chromosome13 (Build37)
Map Location 9,576,197 - 9,576,513
singlet/doubletsinglet
Overlap geneDip2c
Upstream geneAdarb2, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719
Downstream geneLOC666986, Zmynd11, Chrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051F08.T7 (MSMg01no051_f08.b1)MSMg01-051F08.TJ (MSMg01no051_f08.g1)
ACCAG280131AG280132
length1,282710
length of high quality
(start - end)
409 (52 - 460)320 (74 - 393)
definitionCHROMAT_FILE: MSMg01no051_f08.b1 PHD_FILE: MSMg01no051_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:52 2005CHROMAT_FILE: MSMg01no051_f08.g1 PHD_FILE: MSMg01no051_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAGTTTTNNNNNNGATCATTGGGCGCTNXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATCTGGAGAGAACCAGCAATATTTGAAGTAACCAATCTT
GATAAACAAGATAATCCATTCTTACGCATAAGAATGAAACACCCTCACTA
CAGAAAACTTGAAGCCTATTCTTTTTTTGAGACAGGGTTTCTCTGTATAA
CTGTAGCCCTGGCTATTCTGAAATTCACTTTTTAGGCCAGGCTGGTCTCC
AACTCATGAGATCCACCTGCCTCTGATCTCTGAGTGCTGAGATAAAAGGT
ATGTACTACCACACCTAAGCTCGAAGCCGATTCTTATGCTTGCACTAAGA
ACTAGTGTGACTTCACCCCTTTCAGCTGCATAGTATAACTGACATGACCC
AGTACCTCCGTATTGCCCCAGTGAGGGCCTCTGGTGAGCTGGCACAGGGA
CAGATGACCTCTTGTCGAACGCCCTTACTCTGGAAGACATTGACAAACGA
ATCAGGAGAAGAAATACACCCTGGAGGCAAAGAGGGACAATGGTCAGACA
AGTCCCACACTGTGACTGACTTAAAATTATTCCATAATAGCAAAATGATT
TTGAAGTTAGGATTCAGACATAATCATAGCAAGGCTGTACCGAGAACCCA
TACATTTATTACCCTTTATTATTTATGTTATTTTGCCAGGTAATATTTGC
TTTCCTTTATCAAGATATTTCTATATTTTATATTTTTATTTGTTATATTT
TTCTTCTTGCATGATTAAGTGTCTTTTATTACTTCTTTTTTTCCTGTCCT
ACTGCCTTTTCTTCCCCATTGTCTTCTTTCTATACTTTTCTTCTTTATAT
TCTTTTCCTTTTCATTTATCTCCATTCCTTTCATTTTTCTCCTCCCATTT
TTCCCTCCTTTTTTCTTTTTTCTCCCTTTTTTTTCTTTCCTTTTCTGTCT
CCTTTTTTTTCCTTCTCTCTCCTCTCTTCTCCTCTTTTCTTTTTTTTTTT
TACTCTCTTTCTCTCTACTTTCTCCCTTTNTCTTTCCTTCCTCATCCCCC
TTTTTCTTCTCTCTTATTTGTTCTCTTTCTTCTCTACTCTTCTGCTTTCT
CTCTCCTTTTCTCTATTTTTCTTTCATTTTTATCTCCTTCTCTTCTTATT
CTCCTTTTTCTTTTTCTTTTATTTTGTTCTTCGTTTGTTTCTTTTCCCCC
CTTTATTTTCTATTATTTATTCACTCGCTTCTCATTATCTCTATCTCTCT
GCTTCTCTATTCTCTTTCTTTGCTTAATTCTC
CGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTCATTATCCACATGCTTGATATTTG
TGTATTTGCTTACTAGACAAAATTTATTTGTAATACCCTCAAGTCAGTGG
AAGGTTTTCTGTCATCTATGAACATATGCAGAACCCCAAAATTCTTGTGC
ACTTTTGTGACAACAGAGACAACAGAGTTCCAAAACAGCAAAGCGGCAGG
TTCCAGCAGTGGGCGTGGCAGAACGATTGAGCGGGAAGCTCCACCCCTGA
GCAAGCAGGTTTCAGGCTGGTGGAGGGGAGACTACAGTTAAAGAGGCCAA
TGAATGTCACTGTGGCGGTTTAAGTAAAAATGGCCTCTGTAGGTTGACTG
CGTATTCTTTACCCCCCCCCCCCTGCCTTGAAAGTGTTAGAAGATGTAGT
CTTGTTGGATGTATTTATTTACCGATGTGCGTGTGCTTTCTTGTTCTTTC
TATATTTTATGCTTTTTTGTTTTTCTATCTTTATTTGGGTTTTTCCGATT
TTTTTCCTTTTTTTTTTTCCTGTGTTTTTTTTTTTTCTTTTTTTTCTTTA
TTCTTTTTCTCTTTTCCTGTTTTTTCTTCCTCGTCTCTTTTTCTTCCTTC
TTGTTTCACCCTCTCTATTTATTTTCCTGTCATAATTTTCTTCTCTTTTT
TTTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_f08.b1 MSMg01no051_f08.b1 CHROMAT_FILE:
MSMg01no051_f08.b1 PHD_FILE: MSMg01no051_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:52 2005
         (409 letters)



>mm_chr13_9576197_9577005
          Length = 809

 Score =  576 bits (298), Expect = e-169
 Identities = 313/318 (98%), Gaps = 1/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctggagagaaccagcaatatttgaagtaaccaatcttgataaacaagataat 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaattcatctggagagaaccaggaatatttgaagtaaccaatcttgataaacaagataat 258

                                                                       
Query: 65  ccattcttacgcataagaatgaaacaccctcactacagaaaacttgaagcctattctttt 124
           |||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||
Sbjct: 257 ccattcttacgcataagaatgaaataaactcactacagaaaacttgaagcctattctttt 198

                                                                       
Query: 125 tttgagacagggtttctctgtataactgtagccctggctattctgaaattcactttttag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tttgagacagggtttctctgtataactgtagccctggctattctgaaattcactttttag 138

                                                                       
Query: 185 gccaggctggtctccaactcatgagatccacctgcctctgatctctgagtgctgagataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gccaggctggtctccaactcatgagatccacctgcctctgatctctgagtgctgagataa 78

                                                                       
Query: 245 aaggtatgtactaccacacctaagctcgaagccgattcttatgcttgcactaagaactag 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 77  aaggtatgtactaccacacctaagct-gaagccgattcttatgcttgcactaagaactag 19

                             
Query: 305 tgtgacttcacccctttc 322
           ||||||||||||||||||
Sbjct: 18  tgtgacttcacccctttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)