BAC Information

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BAC

Clone NameMSMg01-053D13
Chromosome13 (Build37)
Map Location 13,491,270 - 13,491,799
singlet/doubletsinglet
Overlap genenone
Upstream geneHeatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b
Downstream geneLOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053D13.T7 (MSMg01no053_d13.b1)MSMg01-053D13.TJ (MSMg01no053_d13.g1)
ACCAG281497
length710707
length of high quality
(start - end)
---530 (72 - 601)
definitionCHROMAT_FILE: MSMg01no053_d13.b1 PHD_FILE: MSMg01no053_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:04 2005CHROMAT_FILE: MSMg01no053_d13.g1 PHD_FILE: MSMg01no053_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:04 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXX
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGTCCTCAAGCTTGCTGAGCAAACACTC
TTACACACCAAGTCATCTCTCCAGTCCCCAATTTCTCACTGTTGAAGGCA
TACATGAAATAATCAAGTAAGACCTACACAATATGGTAAGCTATTCATTA
CCATCTGGCCTCCCCAGTTAGGGAATCATATTTCTGAAGTAAAAGGTCCC
ACCATAGGAGGAGGAACTGCAGATACACCATTGTCGTGTTCTCAGTTGGT
TTTTGTCACTGAGATGTGGCTGAGGCTCTCTTAATTTGACACCCTTGCCC
CAAACTGAGTTGGAAGCTCATGACTCAAAGATGAGGAACTGCATAGTCTT
GTTCTAGAGAGAGGAGCTCTCCCACCACCTTTGACAACCCCTTTACTCCC
CCACCTCCCGTATAGATATTAACTGGGCCAAATATGTGCCTCTTGTTACC
ACTGTATGTCTAGATGGAATAGGTGTGTTCCTGAGAGATTCACCTACAAG
CCAGATTGTGGTTTCTCGTGAAGCCTCGCCTTCTTGATATAGAAACCTTG
GCATAGCTGGACAGCCGGTGGCGCATGACTTTAATCCCAGCACTTGCCAC
GTTTATCCCCTTGCACCTATGATTTCTAGTCCATCCTGACTATATCTTGA
TCTCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_d13.g1 MSMg01no053_d13.g1 CHROMAT_FILE:
MSMg01no053_d13.g1 PHD_FILE: MSMg01no053_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:04 2005
         (530 letters)



>mm_chr13_13491013_13491942
          Length = 930

 Score = 1017 bits (526), Expect = 0.0
 Identities = 529/530 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtcctcaagcttgctgagcaaacactcttacacaccaagtcatctctccagtccccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aggtcctcaagcttgctgagcaaacactcttacacaccaagtcatctctccagtccccaa 728

                                                                       
Query: 61  tttctcactgttgaaggcatacatgaaataatcaagtaagacctacacaatatggtaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tttctcactgttgaaggcatacatgaaataatcaagtaagacctacacaatatggtaagc 668

                                                                       
Query: 121 tattcattaccatctggcctccccagttagggaatcatatttctgaagtaaaaggtccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tattcattaccatctggcctccccagttagggaatcatatttctgaagtaaaaggtccca 608

                                                                       
Query: 181 ccataggaggaggaactgcagatacaccattgtcgtgttctcagttggtttttgtcactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ccataggaggaggaactgcagatacaccattgtcgtgttctcagttggtttttgtcactg 548

                                                                       
Query: 241 agatgtggctgaggctctcttaatttgacacccttgccccaaactgagttggaagctcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agatgtggctgaggctctcttaatttgacacccttgccccaaactgagttggaagctcat 488

                                                                       
Query: 301 gactcaaagatgaggaactgcatagtcttgttctagagagaggagctctcccaccacctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gactcaaagatgaggaactgcatagtcttgttctagagagaggagctctcccaccacctt 428

                                                                       
Query: 361 tgacaacccctttactcccccacctcccgtatagatattaactgggccaaatatgtgcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgacaacccctttactcccccacctcccgtatagatattaactgggccaaatatgtgcct 368

                                                                       
Query: 421 cttgttaccactgtatgtctagatggaataggtgtgttcctgagagattcacctacaagc 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cttgctaccactgtatgtctagatggaataggtgtgttcctgagagattcacctacaagc 308

                                                             
Query: 481 cagattgtggtttctcgtgaagcctcgccttcttgatatagaaaccttgg 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cagattgtggtttctcgtgaagcctcgccttcttgatatagaaaccttgg 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)