BAC Information

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BAC

Clone NameMSMg01-053E06
Chromosome13 (Build37)
Map Location 5,237,270 - 5,237,647
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053E06.T7 (MSMg01no053_e06.b1)MSMg01-053E06.TJ (MSMg01no053_e06.g1)
ACCAG281528
length699696
length of high quality
(start - end)
---378 (74 - 451)
definitionCHROMAT_FILE: MSMg01no053_e06.b1 PHD_FILE: MSMg01no053_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:08 2005CHROMAT_FILE: MSMg01no053_e06.g1 PHD_FILE: MSMg01no053_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCTTCTT
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGCTGAATTTCTCTACTGCACCATT
GTAAAGTTAATATGCATTACTTATAGTCATTGTTGCTTTTCTGGCAATAG
AAAACTCACAAATTTCTGGTTCCTGGTGTACCAGAATGATCTCTTTAAAA
TGTTCATGGCAAAACTGTTTTAAATACCATCCGTTCTCCTCAGTGTGCCT
TCTCTTCTAGCCAAGACTTCTTTTCCAGTGGTGATTAATTTATGCTGCTC
AAGAACTAACACCAGATGCATTTTCATATGAGGAAATGATTTCCTTTAAG
TAGAAGACTATGTAGGTGCAAGACCTTTTGTGACCATGTCTGACTCTCAG
ACCATTGTGATTTCTATGAAAAGCTTCTACATATCCCTGGCAGGAAAGTA
GCTCAAAGTATTGATCCATTAATGACATATTTGATCACATTACATTATTC
AATATGTTTTGAGTATTCAATAATTCAATTATAATAAGTTTTCACATAAC
TTTTTTTACATTTTAAAAATGACCCATAGGAATTGTCTTGTTTCTCATTA
TTATGTATTGCCCGTGCCCAACAGAATTATTTTAATGCGCCATTTTTTAT
ACATATAGGCCCAATAATCTGCTAAAACTAACTCATTATTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_e06.g1 MSMg01no053_e06.g1 CHROMAT_FILE:
MSMg01no053_e06.g1 PHD_FILE: MSMg01no053_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:08 2005
         (378 letters)



>mm_chr13_5237070_5237847
          Length = 778

 Score =  646 bits (334), Expect = 0.0
 Identities = 367/378 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgctgaatttctctactgcaccattgtaaagttaatatgcattacttatagtcattgt 60
           ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 catgctgtatttctctactgcaccattgtaaagttattatgcattacttatagtcattgt 260

                                                                       
Query: 61  tgcttttctggcaatagaaaactcacaaatttctggttcctggtgtaccagaatgatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttttctggcaatagaaaactcacaaatttctggttcctggtgtaccagaatgatctc 320

                                                                       
Query: 121 tttaaaatgttcatggcaaaactgttttaaataccatccgttctcctcagtgtgccttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tttaaaatgttcatggcaaaactgttttaaataccatccgttctcctcagtgtgcctact 380

                                                                       
Query: 181 cttctagccaagacttcttttccagtggtgattaatttatgctgctcaagaactaacacc 240
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 381 cttctacccaagacttcttttccagtggtgattaatttatactgctcaagaactaccacc 440

                                                                       
Query: 241 agatgcattttcatatgaggaaatgatttcctttaagtagaagactatgtaggtgcaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 agatgcattttcatatgaggaaatgatttcctttaagtagaagactatgtaagtgcaaga 500

                                                                       
Query: 301 ccttttgtgaccatgtctgactctcagaccattgtgatttctatgaaaagcttctacata 360
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 501 ccttttgtgaccatgtctgactctcagcccattgtgatttctataaaaagcttctacata 560

                             
Query: 361 tccctggcaggaaagtag 378
            ||||||||| |||||||
Sbjct: 561 gccctggcagaaaagtag 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)