Query= MSMg01no053_f03.b1 MSMg01no053_f03.b1 CHROMAT_FILE:
MSMg01no053_f03.b1 PHD_FILE: MSMg01no053_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:12 2005
(530 letters)
>mm_chr16_77515723_77516652
Length = 930
Score = 928 bits (480), Expect = 0.0
Identities = 492/496 (99%)
Strand = Plus / Minus
Query: 34 ttcatgaattatactggattttctagggctatttttatagtagttgtatgaaaataaaaa 93
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 817 ttcatgaattatactggattttctagggctatttttatagtagctgtatgaaaataaaaa 758
Query: 94 ataaataagtagatgtttaaaataaaaattagaaatcaactccaattaaaatatcttaga 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ataaataagtagatgtttaaaataaaaattagaaatcaactccaattaaaatatcttaga 698
Query: 154 aggctgaaaagtagagttaatggcctagtgatctgtgtatctgttggaccaggccatatg 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aggctgaaaagtagagttaatggcctagtgatctgtgtatctgttggaccaggccatatg 638
Query: 214 gagcttcaacagtaggtactagagataaataatagtcaaattgatccttacattacctgt 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gagcttcaacagtaggtactagagataaataatagtcaaattgatccttacattacctgt 578
Query: 274 ataggttcctgtacacaacaacaatagaagtagctaatagaccaaactaactctatgaca 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ataggttcctgtacacaacaacaatagaagtagctaatagaccaaactaactctatgaca 518
Query: 334 tatatcaggccagatctgtccctaggcccttaaactaaagcaggtagtctatctccagaa 393
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 517 tatatcaggccagatctgtccctaggcccttaaactaaagcaggtagcctatctccagaa 458
Query: 394 atcctcttcttataagaaatgatatatatcctgagtcgagtttccatgtaattatgcttt 453
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atcctcttcttagaagaaatgatatatatcctgagtcgagtttccatgtaattatgcttt 398
Query: 454 ctttgttaactggtgattatattctactgggaaattttttcccaaattatattgtgttta 513
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctttgttagctggtgattatattctactgggaaattttttcccaaattatattgtgttta 338
Query: 514 aatatgttgtaataaa 529
||||||||||||||||
Sbjct: 337 aatatgttgtaataaa 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no053_f03.g1 MSMg01no053_f03.g1 CHROMAT_FILE:
MSMg01no053_f03.g1 PHD_FILE: MSMg01no053_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:12 2005
(480 letters)
>mm_chr13_30029804_30030685
Length = 882
Score = 671 bits (347), Expect = 0.0
Identities = 389/417 (93%), Gaps = 23/417 (5%)
Strand = Plus / Minus
Query: 1 acgtggtgggaagagaatggactcaaacctctgacgttcacaaatacacacacaataaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 acgtggtgggaagagaatggactcaaacctctgacgttcacaaatacacacacaataaat 358
Query: 61 t--aaaaaaaaaacaccaaggcttttgagcactgtcaaaaatgcctcagttcacttcatc 118
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 taaaaaaaaaaaacaccaaggcttttgagcactgtcaaaaatgcctcagttcacttcatc 298
Query: 119 tttgaattttaattttgttttgctcaagagtcccttaatagtgccagattttcatcatcc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tttgaattttaattttgttttgctcaagagtcccttaatagtgccagattttcatcatcc 238
Query: 179 ccctcattagttacgtgaccccatagagggtcatgaaggagctactaagatgggtgggta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ccctcattagttacgtgaccccatagagggtcatgaaggagctactaagatgggtgggta 178
Query: 239 gccaaaggaacctgctcccaggctgacacttggcttgatcccctaggacacacaagctag 298
|||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 177 gccaaaggcacccgctcccaggctgacacttggcctgatcccctaggacacacaagctag 118
Query: 299 aaggagagaactgactgctgcaaagaagtg---------------------gtgtgtgtg 337
||||||||||||||||||||||||| ||| |||||||||
Sbjct: 117 aaggagagaactgactgctgcaaaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 58
Query: 338 tgtgtgtgtgtgtgtgtgtatacatgtacacaacatgcaaatttaatatataagtgt 394
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 tgtgtgtgtgtgtgtgtgtatacatgtacacaacatgcaaatttaatatataagtgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 882
Length adjustment: 10
Effective length of query: 470
Effective length of database: 872
Effective search space: 409840
Effective search space used: 409840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
