BAC Information

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BAC

Clone NameMSMg01-053N01
Chromosome13 (Build37)
Map Location 86,783,985 - 86,784,334
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053N01.T7 (MSMg01no053_n01.b1)MSMg01-053N01.TJ (MSMg01no053_n01.g1)
ACCAG281926AG281927
length714707
length of high quality
(start - end)
455 (45 - 499)517 (76 - 592)
definitionCHROMAT_FILE: MSMg01no053_n01.b1 PHD_FILE: MSMg01no053_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:50 2005CHROMAT_FILE: MSMg01no053_n01.g1 PHD_FILE: MSMg01no053_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAGAGAAAGCCGTGATCTGAAAATAGAGCCCCAAGATAATCCCAG
GGATAATAAAATTCCATGAGGGCCATGGCTTCAAGGTCTGTGGGATTTAT
GCCAAAACAAAAGCTGTTTTGGAACTGTCCTCAAAATGCTAAAGGCAACC
CTCAAACAGCATGAGGGATTAGATTTACAAGAGACCCAACTGCATGCAGA
GCCAAAGCCAAACACTGTAAAGGAATACAATAACTTCTGTCCATTACAAC
ACAGAAAGCTTAATGCTTTACACTTTAAAAAGCTTCTTAGGTTATGGTGT
CACCTAGCTCCAGCTCTCCCAATTTTTATAAAAAAGAATGCATGTGTCAT
TAATTGATGTGTAAGAAGGTAGGGTTTTCCTACGGTCTAATGTTTATTTC
CTTCTCCCATTTGAAATTCAAATGTTGAAAAGAAATTCCCAATGTGATGG
CAGGAAGATCTGAGGCCTTTGGTAGCAAACAGGATGAACTCCTTATTTAA
AGACAGTGCCTTCCAGAAATCTCTCTCTCCCTCTCTCTCTCTTTACCTCG
ACCGGTTAGAAACCTCCTGTAGGTACTACTGACGAGGAACTAGGTCCCCA
TCACATAACACCCTGCCTCGATCTTGAAATTCCTACTCTCTAGCTCTAAC
AGAAACGATCCTAC
TTCAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTACCCTGGATATCCCAATTTATT
CAGAAATTTTCATTTGTTATTTATATGTGACATATAAGGTTTTGTTGCTT
GTATCCCACAAAATCCTTAAATAATAAATGTTTTGGTTTGAATCTTGTTT
ATTTGGTAAGGTATACACTGGTGCACATATATAATGTATATTTTATATTA
TATATAATATCTTATATACTAATTAATGAACATTAATTATTTAAATAAAA
TATAATCATAGTATTTTTATATTTCTGTTATAATATATAAGCAGAGTATA
AATATAATATAAAATATATGATAAAAATTGTATTACTATAAATGCATAAT
TGTGTAATTAATTATAGAAAATAATATAATAATGTAATATATTACTACAC
ATTAATATGTTTATATAATATTTAACATATATGTTAACTGACCAAAAGAA
TGGATTCTGAGAAGTAAATTCACAGCATTGAATGGGAAATATATTAGTAA
AGGAAAGACACAAGATAAATATAGAATACAGTGAGAGTTTGCTCATAGAT
ATAAAACAAATGGAGAAACTTGGTTCCAAATCTATAGGGGCTATCAAAAT
TATTTCATTAATTAAATTTTATAGATAACGCTGACTAATAGCCTAAATAT
AACCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_n01.g1 MSMg01no053_n01.g1 CHROMAT_FILE:
MSMg01no053_n01.g1 PHD_FILE: MSMg01no053_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:50 2005
         (517 letters)



>mm_chr13_86783985_86784901
          Length = 917

 Score =  590 bits (305), Expect = e-173
 Identities = 339/351 (96%), Gaps = 3/351 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaccctggatatcccaatttattcagaaattttcatttgttatttatatgtgacatat 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tttaccctggatatcctaatttattcagaaattttcatttgttatttatatgtgacatat 291

                                                                       
Query: 61  aaggttttgttgcttgtatcccacaaaatccttaaataataaatgttttggtttgaatct 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 290 aaggttttgttgcttgtttcccacaaaatccttaaataataaatgttttggtttgaatcg 231

                                                                       
Query: 121 tgtttatttggtaaggtatacactggtgcacatatata--atgtatattttatattatat 178
           |||||||||||||||||| | ||||||||| |||||||  ||||||||||||||||||||
Sbjct: 230 tgtttatttggtaaggtaaagactggtgcatatatatataatgtatattttatattatat 171

                                                                       
Query: 179 ataatatcttatatactaattaatgaacattaattatttaaataaaatataatcatagta 238
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 170 ataatatcttatatactaattaataaacattaattatttaaataaaatataatcatagta 111

                                                                       
Query: 239 tttttatatttctgttataatatataagcagagtataaatataatataaaatatatgata 298
           |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 110 tttt-atatttctgttataatatataaacagagtataaatataatataaaatatatgata 52

                                                              
Query: 299 aaaattgtattactataaatgcataattgtgtaattaattatagaaaataa 349
           |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 51  aaaattgtattactataaatacataattgtgtaattaattatagaaaataa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)