BAC Information

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BAC

Clone NameMSMg01-054A21
Chromosome13 (Build37)
Map Location 59,962,470 - 59,962,749
singlet/doubletsinglet
Overlap genenone
Upstream geneNtrk2, LOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
Downstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054A21.T7 (MSMg01no054_a21.b1)MSMg01-054A21.TJ (MSMg01no054_a21.g1)
ACCAG282095AG282096
length787761
length of high quality
(start - end)
---281 (129 - 409)
definitionCHROMAT_FILE: MSMg01no054_a21.b1 PHD_FILE: MSMg01no054_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:09 2005CHROMAT_FILE: MSMg01no054_a21.g1 PHD_FILE: MSMg01no054_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTAAAGGGGTTNNNTTTTAATATGGTGTGGTACANAAATAATANNN
CATTATAATTTGGGCGGTAAAGANTCATTTTCGATTTGNANGGNGGAANN
NNNGTTACATTATAGTTTGAGNNTNAGGNAAAATGTNTTNNAGTAATGTN
ANNTATTAAACCCTTATTTTTATTTAGATTAGGAAGAAAANTTNNTTTCT
AGATTTATAAATGGTGATGAGGANATTTTTATGTTTNTGAAAGTANTTTT
ATGTNTTTAATNAGGGTGGAGTCAAATNGTTAAATTTATATTTAATATAG
ATTATGGTAAATGGATANAATTGGATCTTCAGGGATTCTTTGGNTTAATT
TATTTTTTTTTTTTTTNAGAAAANAGNGAAANTTGAAGGGAAATGATTTT
TTTTACACACACAGAGAGAGAGAGAGAGAGACAGAGATATATAGATATAT
ATAGAACAAAAAAAAAAAAAAATGAGAGATGGAGATAGAGATATGGATAC
AGATATAGAGAGATATAGAATGAAATATATGTGATATATATATTTTGAGA
GTTAGAGATATTGGGGAATGAATGGGAGAGGTGGGGGATAGAGTAAAATA
TGATAGATAGGATGGGAGGTAGGTAAGATGGAAAATGATTTCATAAAAAA
AAAAATGGAAATGGGTTTTTGGGGGGAGGAAAGAAGGAATAATTTTTGAT
ATAGGTTTTATTTTTATTGTTTATAAGAAAAAAGATTTTAATGGTGGAAG
TGTATGAGATTTTTTTAAAGAGTATTAGAATATGGGA
NCCCCTTTTNNTTTCTCCCCTCCGCTGAGGTATNNTTATATTTTTTNNNC
CACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCT
CGAACTCAGAAATCCGCCTGCCCCTGCCTCCCGAGTGCTGGGATCAAAGG
AGTGCGCCACCACACTCAGCTGACATCACATTCTTATTGCTTCACTATTT
ATAACAGTCATGTGTTACTCTTATATAGACAAGTTAAAGAGCCATGGAGA
GCGCAGTAATCCAGTCTCATCGGCAGGGTGAGATAAGCAAAGTAGCTATC
AATGCAAAAAAAAGGTTTGTTAGCTGGGCTGGAGACATGGCTTAGTGAGC
ACTGACTGTTTTTCCACAGGCCCCGCGTTCAATTCCCAGCAACCTCGTGG
TGGCTCGCAACCATCTGTAATGGGATCCGATGGACTCTTCTGGTGTGTCT
GAAGACAGCTACGGTGTACTATTCATAGGCATAAAACAGATAATTCTAAA
AGGAAAAAAGAAGAAGAGGAAAGGTTTGTTGGCTCACAGCTCGAGAGAAT
TAAGGGCCACAAACCAGCCCTGGTGTGTCTCTAGTGAAGACATGTAGAGG
AGGATGGAAAAGAACGTGTCTCTTTCCTGGGGCAACCCTCAGTTAAGGTA
AGTCCACCCATTATACCCCACCTCTCAAAGGTCCCTCTGTCTCTCCAACT
GCCAAGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_a21.g1 MSMg01no054_a21.g1 CHROMAT_FILE:
MSMg01no054_a21.g1 PHD_FILE: MSMg01no054_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:09 2005
         (281 letters)



>mm_chr13_59962177_59962857
          Length = 681

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagaccaggctggcctcgaactcagaaatccgcctgcccctgcctcccgagtgc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 573 actttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgc 514

                                                                       
Query: 61  tgggatcaaaggagtgcgccaccacactcagctgacatcacattcttattgcttcactat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgggatcaaaggagtgcgccaccacactcagctgacatcacattcttattgcttcactat 454

                                                                       
Query: 121 ttataacagtcatgtgttactcttatatagacaagttaaagagccatggagagcgcagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttataacagtcatgtgttactcttatatagacaagttaaagagccatggagagcgcagta 394

                                                                       
Query: 181 atccagtctcatcggcagggtgagataagcaaagtagctatcaatgcaaaaaaaaggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atccagtctcatcggcagggtgagataagcaaagtagctatcaatgcaaaaaaaaggttt 334

                                                   
Query: 241 gttagctgggctggagacatggcttagtgagcactgactg 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gttagctgggctggagacatggcttagtgagcactgactg 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)