BAC Information

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BAC

Clone NameMSMg01-054G05
Chromosome13 (Build37)
Map Location 38,587,546 - 38,587,703
singlet/doubletsinglet
Overlap geneBmp6
Upstream geneLOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik
Downstream geneTxndc5, Muted, Eef1e1, LOC621102, Slc35b3, EG666867, LOC100041779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054G05.T7 (MSMg01no054_g05.b1)MSMg01-054G05.TJ (MSMg01no054_g05.g1)
ACCAG282337AG282338
length788906
length of high quality
(start - end)
44 (425 - 468)166 (126 - 291)
definitionCHROMAT_FILE: MSMg01no054_g05.b1 PHD_FILE: MSMg01no054_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:33 2005CHROMAT_FILE: MSMg01no054_g05.g1 PHD_FILE: MSMg01no054_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNCCCCCCCCCCCTTCCCCCCACTCCCCGAGACAAGC
ACGCACCTCTAAAAATTGCGGCCGCTAANNAGATCACTTTTCGGAGCCGA
GGGNGGAANNNNCNTTTTCCAAAAGAAGGGGGNAGAAAGNGNAAGGAAAN
CNAAGNGGNNNAAANNACCTCAGCCGCCNCAAAGCAGAACAAGGGAGAAC
ACACGCAACAGNACACGACCAGAGGAGGGAANACAGCCAGAAACCCACAG
GGCAAAACACCCCGAGCNCCAGCGGCANACAAACAACAAGGAGNCACGAA
ACTAGGAAGGCCCAGGCAAACAGGAAAACCAGAACAGGCGACACGCAGAG
CGGAANACCAAAAACGGGTTTTTTTTTTTACCCACTGACACCAACTTACA
TTGCCTATTCTGGAATATGTGCCTTCTATACCTGTAGAGACTGTTATGAT
TAAAATTATTATTTTTTTTTTCTCTGGAGATGATTTCTCTGTGTAGTCCT
GGATGTCTTAGAACTTGCTCTGCGGACAGGCTGGGCCTGAGCCTAAAGAC
CTGTCTGCCTCCCAAGTGCTGATAGTAAAGACATGCACACCATCAACTGC
ACTTATGGTGATCATTTTTTATAGTGTTCCTTTCATATGGAGAACTCCGT
AGATTATATTTGACCGAATGTTTTTGCGAAAACGCTAAGCCCAACAGTGG
CGGGCGCCTTTCTCACTTATTTTTATTTTTCAGCTTTAACGGGCAACCGG
ACAGCGTCTGTGAATTTGATGTACCTCAATTGAGCCTN
NNNNTTTTNNNCCCTTCCNNNTTGCCTCCCAGCCTTCATCTTGTTGTTTT
ACTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAGTTCTGTACCCTTTCTTCTGAT
TTGGGGTTGGGAATTCTAAGAGGATAAGTGTTAACATCTAGTGCAAATAC
ATTCGTGAGGTAACTCCTTGGTTTGTATAGTTGATTGACAAAGGCAGAGG
TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACACTTAATTT
ATACAAACATAAATTCTCCCACAAACATTTTTTCTCTTCCTCTTCTACTA
CTTTTATTAAATTTCATTTTTTATTTACTACTTTATATTACAGTTCCAGC
TTAGGCACCCCTCCTTTTTTTCTGCCCCCCTTCTTATTTTTTATTTTTTA
TATTTCTTTTTTATCTTTTTTTTTTTTTTCTCCCCCCGCTCTTGAAATTT
TCTCTTTTTTTTCTTTCCCTGCTCCTTATCCTATATTCTCCTCCCACTCT
AGTTCCCCCTCTCTTTTTCCCATTTTCCTCCCCCCTCATTTATTTTTTAA
TTTTTCCTTCTACTCCCGACAAGAATTTGAACACTTTCTTTATACCTCCT
TCCGTCCTCTCCCATCCTCCTTTCATACCAATTATCGTCTTATATATTTA
TTTTATTAATTTTTCTTTTTTTTTATCAACTTATAACACTTATAAAATAG
ATAGAAATTACATAATATAATACTAGTTATTGATTGGACAGTCTGAGTTT
TTTTATTCTTTCACTCATGCTCTTTTTTTTTACTACTTCCATATATTTTC
CCATCACTCCTTACGTGTAAACTTCTTTTTTATTGCTTATCCACCTTTAA
CTACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_g05.g1 MSMg01no054_g05.g1 CHROMAT_FILE:
MSMg01no054_g05.g1 PHD_FILE: MSMg01no054_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:33 2005
         (166 letters)



>mm_chr13_38587346_38587911
          Length = 566

 Score =  298 bits (154), Expect = 1e-85
 Identities = 157/158 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagttctgtaccctttcttctgatttggggttgggaattctaagaggataagtgttaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tgagttctgtaccctttcttctgatttggggttgggaattctaagaggataagtgtttac 260

                                                                       
Query: 61  atctagtgcaaatacattcgtgaggtaactccttggtttgtatagttgattgacaaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctagtgcaaatacattcgtgaggtaactccttggtttgtatagttgattgacaaaggc 320

                                                 
Query: 121 agaggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)