BAC Information

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BAC

Clone NameMSMg01-055C22
Chromosome13 (Build37)
Map Location 80,967,740 - 80,968,032
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055C22.T7 (MSMg01no055_c22.b1)MSMg01-055C22.TJ (MSMg01no055_c22.g1)
ACCAG282918AG282919
length723753
length of high quality
(start - end)
292 (70 - 361)234 (71 - 304)
definitionCHROMAT_FILE: MSMg01no055_c22.b1 PHD_FILE: MSMg01no055_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:32 2005CHROMAT_FILE: MSMg01no055_c22.g1 PHD_FILE: MSMg01no055_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTCTTTTCCCCAACAAGAAGGAGGAGCTTATGTCTGTTTGCTGACT
TTCTTGTATTTATTGGGCCTCCAACAATTTTAAAAAGGCTCAGAGTGTAA
GCATTATAATCTTTAGCTTTGGAGGTTATGACACTTTAAATTTTTATTCT
TTTACAATTTCTCATGAATATATAGTTGGATTATATTTTCCCAGTATCTT
TTCTTTTCATCTTCTTCATCCCATGAAACCCCATTTTCCAAAAGAGATTT
CATTTCCTTTCTTGTCTTGTGCATATATACATTTATGTATGTATACAGAT
GTGCATGCATGTATGGGCATGTGCGCACATGTGTGTGCATGTGGCATATG
TGTATGTATGTGTGAGTGTATATACATGTGTGTTTGTATATATGTTTGTG
TCTGTGTATATGTGTCTGTATATATATATATATATATATATATATCTGGA
TGTATGGGTGCGGTGTTTTGTATTCAAGCACCCCCTTCTTATTAATAAAC
ATAACACAAGTATGTAATGCAATTCTTATTGTATTTATAATGTATCCCTT
GGTAACTGCGATATAAAACACCATTTTTTAAGCCTATATGTTGAGATATG
CATCACTTACCCTACTCCTCATTCCATGGAGCCAAAAGTATGCTATTGGT
TTCTCTATAATCATTTAATACTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCCCAACTCTTTGTATAGCCCTCTACAGGATGTAGGA
TTGGTAAAGATCTTTTTGCAATCTGCTTGTTGCCTTTTTGTCCTATTGAC
ACTGTCCTTTGCCTTACACAAGCTTTGCAATTTTATGAGGTTCCATTTGT
CTATTGCACATCTTATAGCATAAGCCACTAGTGTTCTGTTCAGGACTTTT
TCCCCTGTGCCCATATCTTCGAGGCTCTTCCCCACTTTCTCCTCTATAAG
TTTCAGTGTCTTGGTTTTATGTGTATGTCCTTGATCCACTTGGACTTGAG
TTTTGTAGGAGGACATAAGAATGGGCCGATTTGCATTTTTCTACACGCTG
AGCCCCAGTCGAATATTCTCCCTTTGTTAAAAATGCTGTCGTTTTTCCAC
TGCATGGTTTTAGCTCTCATTGCCAAAGATCAAGTGATCATACGCGCTTG
GTCTCATCTCTGGATCTTCAATTCTATTTCATTGACCTTTCTGACTGCTC
CTGACCCCATACTATTACAGTTGCTTTTATCACCATTTCTCTGTAATACA
CCTTTGAGGTCAGGGATAGCGATTCCCCCAGAAGCTTTTATATTGCCGAG
ACTAGTATCCCGCTATCCTGTTTTTTTTTGTTATTCCCAACGAATTTGCT
TATTGCTCTTCTTAACCCCTTCAAAAATTCACCTCTCTAACTTTTCCGGT
TAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_c22.b1 MSMg01no055_c22.b1 CHROMAT_FILE:
MSMg01no055_c22.b1 PHD_FILE: MSMg01no055_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:32 2005
         (292 letters)



>mm_chr13_80967540_80968232
          Length = 693

 Score =  497 bits (257), Expect = e-145
 Identities = 284/293 (96%), Gaps = 1/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaggaggagcttatgtctgtttgctgactttcttgtatttattgggcctccaacaatt 60
           ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 agaaggaggcgcttatgtctgtttgctgactttcttgtatttattgagcctccaacaatt 260

                                                                       
Query: 61  ttaaaaaggctcagagtgtaagcattataatctttagctttggaggttatgacactttaa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttaaaaaggctcagagtgtaagcattataatctttagctttggagggtatgacactttaa 320

                                                                       
Query: 121 atttttattcttttacaatttctcatgaatatatagttggattatattttcccagtatct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 321 atttttattcttttacaatttctcatgaatatatagttggattatattttcccattattt 380

                                                                       
Query: 181 ttt-cttttcatcttcttcatcccatgaaaccccattttccaaaagagatttcatttcct 239
           ||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 381 ttttcttttcatcttcttcatcccatgataccccattttccaaaagagatttcacttcct 440

                                                                
Query: 240 ttcttgtcttgtgcatatatacatttatgtatgtatacagatgtgcatgcatg 292
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ttcttgtcttgtgcatatatacatttatgtatgtatacacatgtgcatgcatg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)