BAC Information

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BAC

Clone NameMSMg01-055D08
Chromosome13 (Build37)
Map Location 26,131,733 - 26,132,053
singlet/doubletsinglet
Overlap genenone
Upstream geneDcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055D08.T7 (MSMg01no055_d08.b1)MSMg01-055D08.TJ (MSMg01no055_d08.g1)
ACCAG282938AG282939
length760735
length of high quality
(start - end)
327 (42 - 368)166 (58 - 223)
definitionCHROMAT_FILE: MSMg01no055_d08.b1 PHD_FILE: MSMg01no055_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:34 2005CHROMAT_FILE: MSMg01no055_d08.g1 PHD_FILE: MSMg01no055_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGACTGCCAAAGCTGCTACACACACACACACACACACACACAACCCC
ATCTCAGAAAAAAGAAACATCATGAAGATATCATCCTTACTATAAAAACA
CTCATGTTTATGTAACCTACCTTCTTGTGCTATGATTGCATGTGACTTGA
GAATGCCTAAGAATCAACATTAATGGAAGCTGTGAACATCAAAACTTCAA
AATACCTGATGTTACACAAAACATTTTCTTCTTCAGGACCAAGTGAACAG
CTAATACTATTTCTTTCTAACACATCATAAATTAAATATTCCTATGCAGC
TTAATAATGTTTTTACCCCCACCCCCTCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCATCCATACTTACTTCCTTCCTTTCTTCCTTCC
TTTTTTTCCTTATTTTTCTCCTTTTCCCCTTTCCCCCTAACCTTTCTTCC
TCCTCCCCCACTATCCTAACTTTTACTTACCACCTTTCTATTATACCTCC
CTACCCTCCCCCAACTATCCTCCCTTCTTTTCTCTCTTTTCACTCTAATC
CTCTACCCCCCTTCATTTTGTTCATCCTTATTTTACCCCATCTCCTTTAT
TTTCCACACCCCGCCTTTTTTAATTTTTATACACCCCCCCCTCAACAACT
ACCTGTCACTATCTAAACCACACTTATTTATTACCTACTCCACCCTTCCT
CCTTCTCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAA
TCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGT
GGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAG
GATTCTTACGTTTACCTTTCGTCATCTGTCAATCTCTGGAGTTAGTTGTT
ATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCT
ATCAGTAGGCTTGCGATACAAGCTCTCTTCTCTGAGTTTCAGTGGTCTGA
GCAGCCTCTCTAGGTAAGCTCTCCTCTCTCATGGAAGGTGTACAGTTATC
TGGCGTTTGGACCTCCTCCTGGCTGATCGTTAACGCTTCTTTTCATGATC
TTTCTCAGAAGCTGTGCTGTTTTGGCCTCTAACGTTGTCATTTTTCTGCA
GTTCAACATGTTTTTTCCCCTTTTTTTTTTGTGTCTCTTTGTCCCTATTT
TGGCTGGCCCGTCCGCTTCTTGCCCATGTTGTTTGTTCCCGATCCCCTGT
TTATCTTTTTTCGCCCGCCCCCCCTTTCCGCCTTGTCTCTTCTGTCATTT
CACCCCTTCTCTTTTCCCCGCCGCCCTTGTTCTCCTGTCTCNACTTTTCG
TGTTTCCATATCACCTTTTTCTTCGCCTGCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_d08.b1 MSMg01no055_d08.b1 CHROMAT_FILE:
MSMg01no055_d08.b1 PHD_FILE: MSMg01no055_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:34 2005
         (327 letters)



>mm_chr13_26131531_26132257
          Length = 727

 Score =  578 bits (299), Expect = e-169
 Identities = 315/321 (98%), Gaps = 2/321 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggactgccaaagctgctacacacacacacacacacacacaca--accccatc 62
           |||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 203 gaattccaagacagccaaagctgctacacacacacacacacacacacacacaaccccatc 262

                                                                       
Query: 63  tcagaaaaaagaaacatcatgaagatatcatccttactataaaaacactcatgtttatgt 122
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcagaaaaaagaaagatcatgaagatatcatccttactataaaaacactcatgtttatgt 322

                                                                       
Query: 123 aacctaccttcttgtgctatgattgcatgtgacttgagaatgcctaagaatcaacattaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacctaccttcttgtgctatgattgcatgtgacttgagaatgcctaagaatcaacattaa 382

                                                                       
Query: 183 tggaagctgtgaacatcaaaacttcaaaatacctgatgttacacaaaacattttcttctt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tggaagctgtgaacatcaaaacttcaaaatacctgatgttacacaaaacattttcttctt 442

                                                                       
Query: 243 caggaccaagtgaacagctaatactatttctttctaacacatcataaattaaatattcct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caggaccaagtgaacagctaatactatttctttctaacacatcataaattaaatattcct 502

                                
Query: 303 atgcagcttaataatgttttt 323
           ||||||||||| |||||||||
Sbjct: 503 atgcagcttaagaatgttttt 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)