BAC Information

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BAC

Clone NameMSMg01-055D18
Chromosome13 (Build37)
Map Location 76,010,565 - 76,010,853
singlet/doubletsinglet
Overlap geneRhobtb3
Upstream genePcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx
Downstream geneLOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055D18.T7 (MSMg01no055_d18.b1)MSMg01-055D18.TJ (MSMg01no055_d18.g1)
ACCAG282958AG282959
length696736
length of high quality
(start - end)
311 (45 - 355)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no055_d18.b1 PHD_FILE: MSMg01no055_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:35 2005CHROMAT_FILE: MSMg01no055_d18.g1 PHD_FILE: MSMg01no055_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTGTACTCCATTTTTAATAGGGTTATTTGGTTCTC
TGGAGTCTTAACTTCTTGAGTTCTTTTTATATATTGGATATAAGCCCTCT
ATCAAATGTAGATTTTATAAAGATCTTTTCTCAATCTGTTGGTTGCTGTT
TTGTCTCATTGACAGTGTCCCTTGCCTTACAGAAGCTTTGCAATGTTATG
AGGTCCCATTTGTCAATTCTTGATCTTAGAGCATAAGCCATTGGTGTTCT
GTTCAGGAAACTTTCCCCTGTGCCCATGTGCTCAAGGCTCTTCCCCACTT
TCTTTTCTATTACCCCCCCCCCCTCTGGTTCTATGTGGAGGTCCTTGATC
CTCTTGGATTTGAGGTTTGTACAAAGACATAAGAATGGATCGATTTGCAT
TCTTGTACATGTTGATTGCCAGTTAAACTAGCACCATTTGTTGAAAAATG
ATTCTTTTTTCCACTGGATTGTTTTTAAAGAAGGAAATCATCTATTCCTC
AAATTGTGTAGTTGTCTAGTTTTATGATTTCTTTTATTTAATTAAATGAA
TTTGTTGTATACATGGTGATTATGGTTAGCTCTAGTTTATATTCTTTTAA
AACTTATGTGCATATAAAATGCTCTTAGCATAGTTTATTAATTGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTGTTAAGGCCCTAAGCTTCGT
CCTGCCTTCTGCACACCTGGCACTTTAAACATGTAAGGGTTTGGGGATCC
CTCCCTTCCGTTTGCACTTGGATTTCATTTTGCTTAGTCAGTCTGATTTC
TCCACCTGCTCTTTAACTTCGCCAGCATGTGGATTAGCAAGATCCTGATT
ACAGGATCTAAATGACAGTAAACAAGCTGCTTACTCAGGGAAATCAGTTG
TCTTGGTTTCCTGAGGAGGCAAAAAAGATTGAGGTAGCCTTTTAAAGAAA
GAACTCCAAACTGGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTTTCA
GGAAGAGGCAGATGGATCTAGGCCAGCCTGGTCTACACAGTGAATTCCAA
AACAGCCAGGACTACAGAATAAGACCCTGCCTCAAACCAACAAACAAAAA
ACAACAAAGGAAGGAAGGAAGGAAAGAAAGAAGGACGGAAGGGAGGGAGG
GAGTCTGAACTCCAGAAAAAGTGATAGCAGAAAAAAAGTTACTTCTGGCG
GCAGTAAAAACAGGCACTAAACAGTCACTCTGTACAACATAACCAAACAC
TTAGCTAAATTAAACCAACTGTGAGCAAAAGACATCCACCAACAGCAAGA
ATCAGCTTTTCCTGTGTGCCGCTGTATGCCTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_d18.g1 MSMg01no055_d18.g1 CHROMAT_FILE:
MSMg01no055_d18.g1 PHD_FILE: MSMg01no055_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:36 2005
         (289 letters)



>mm_chr13_76010365_76011053
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgttaaggccctaagcttcgtcctgccttctgcacacctggcactttaaacatgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgttaaggccctaagcttcgtcctgccttctgcacacctggcactttaaacatgtaa 260

                                                                       
Query: 61  gggtttggggatccctcccttccgtttgcacttggatttcattttgcttagtcagtctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtttggggatccctcccttccgtttgcacttggatttcattttgcttagtcagtctga 320

                                                                       
Query: 121 tttctccacctgctctttaacttcgccagcatgtggattagcaagatcctgattacagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctccacctgctctttaacttcgccagcatgtggattagcaagatcctgattacagga 380

                                                                       
Query: 181 tctaaatgacagtaaacaagctgcttactcagggaaatcagttgtcttggtttcctgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaaatgacagtaaacaagctgcttactcagggaaatcagttgtcttggtttcctgagg 440

                                                            
Query: 241 aggcaaaaaagattgaggtagccttttaaagaaagaactccaaactggg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcaaaaaagattgaggtagccttttaaagaaagaactccaaactggg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)