BAC Information

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BAC

Clone NameMSMg01-055F11
Chromosome13 (Build37)
Map Location 14,917,051 - 14,917,581
singlet/doubletsinglet
Overlap genenone
Upstream geneGng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1, Mrpl32, Psma2, AW209491
Downstream geneEG665099, LOC670994, EG625121, Gli3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055F11.T7 (MSMg01no055_f11.b1)MSMg01-055F11.TJ (MSMg01no055_f11.g1)
ACCAG283038AG283039
length702739
length of high quality
(start - end)
536 (43 - 578)246 (77 - 322)
definitionCHROMAT_FILE: MSMg01no055_f11.b1 PHD_FILE: MSMg01no055_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:43 2005CHROMAT_FILE: MSMg01no055_f11.g1 PHD_FILE: MSMg01no055_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCGTTTCCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCT
GGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCGGCAA
TGGGAGGATTTTAAAATTAACTATAATTCACTGAGTGGGATCTCTAGAGC
TAATTTTGCATTAATTACACTTGCTCTGCAAATTCCCTTGTGTAATAGAA
AAGTGTTATTGTTAAATACTTGGAAGATGTGGTGTCTTCTGTATCTTTCT
GGAAATTAACGATGGTATAATAAGGGTGTTTAAAAATTTTACGTTGAAGA
AACTTGTTTTAATGTTTTCAAGCCTTTTAACCAGCAAATTTATGAACATG
ACCTATCGATGCCCCTTAAAACCTAGGTTATTTATCATGGTCTTTGGGAG
AGGCTGGGAAATGATCATCTGAAGGGACAGAGCCCGAGACTACAAACTTA
GTGGTCTGCAATCTGCTGCACACTAATCTTTCTTGGCTGGATCCAAGACA
TACCGAGAAAGAAGCACTTGCTAATCACCCAGATTGTTTGACGCACCAAT
GGCTCTCCTATATCATTAGTAGCCACTGAATATGCATTACATGTTCGAGC
TCCTCACATAGACAGTATTTCATCATGACTACCATATGTCTGCCTTCTTT
CN
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGATTTTTACCA
TGAACGGGTGTTCGATTTTGTTAAATGCTTTCTCAGCATCTAATGAGATG
GTCATGTGGTGTTTTTCTTTGAGTTTGTTTATATAGTGGATTATGTTGAT
GGAATTCCATATATTGAACTACCCCTGCATTCATGGGAAGAAGACTATTT
GATAATAAAGGATGATTGTTTTGATGTGTTCTTGGATTCTGTTTGCCAGA
ATTTTATTGAGTATTTTGCAACGATAGTCATAAGCAAAATTGGTCTGAAC
TTCTCATTCTTTTTACGTCTTTATGTGGTTTAGATATAAGCATAATTGTG
GATTCATAGAATGAAGTTGGCACCGTTCCTTCTTTCTCTTTTGTGCGCAA
TAATTTGAAGAATAGCTGCATTAGGTCTTCTTTGAATGTCTGATATATTT
TGCTGTTGTTGTTGTCGGAAGACTCCCACCGACCGTTTTTATTTCTTTAG
GTTTTATGGTATTGTTTCCCTTTCTTTCCTTTATCTGCCTTTTCTTTTTT
ACCTGTAATTTCCTTCGTCCCTTTCCTCCCTTTTTTTTCCTTTTTTTCTT
TTCCTGTTTTATTTCATTCCTTTGATACCCCGAATTTCTACGTTACCCTC
ACCCCTTCATTTTCTCTCCCCTCTCTTTTTTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_f11.b1 MSMg01no055_f11.b1 CHROMAT_FILE:
MSMg01no055_f11.b1 PHD_FILE: MSMg01no055_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:43 2005
         (536 letters)



>mm_chr13_14916846_14917781
          Length = 936

 Score =  998 bits (516), Expect = 0.0
 Identities = 528/532 (99%), Gaps = 1/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcgtttccctctgagccccattttttaatggggttatttgattttctggagtc 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttcgtttagctctgagccccattttttaatggggttatttgattttctggagtc 265

                                                                       
Query: 65  caccttcttgagttctttatatatattggatattagtccggcaatgggaggattttaaaa 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 266 caccttcttgagttctttatatatattggatattagtc-ggcaatgggaggattttaaaa 324

                                                                       
Query: 125 ttaactataattcactgagtgggatctctagagctaattttgcattaattacacttgctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaactataattcactgagtgggatctctagagctaattttgcattaattacacttgctc 384

                                                                       
Query: 185 tgcaaattcccttgtgtaatagaaaagtgttattgttaaatacttggaagatgtggtgtc 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 tgcaaattcccttgtgtaatagaaaagtgttattgttaaatacttgtaagatgtggtgtc 444

                                                                       
Query: 245 ttctgtatctttctggaaattaacgatggtataataagggtgtttaaaaattttacgttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctgtatctttctggaaattaacgatggtataataagggtgtttaaaaattttacgttg 504

                                                                       
Query: 305 aagaaacttgttttaatgttttcaagccttttaaccagcaaatttatgaacatgacctat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagaaacttgttttaatgttttcaagccttttaaccagcaaatttatgaacatgacctat 564

                                                                       
Query: 365 cgatgccccttaaaacctaggttatttatcatggtctttgggagaggctgggaaatgatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgatgccccttaaaacctaggttatttatcatggtctttgggagaggctgggaaatgatc 624

                                                                       
Query: 425 atctgaagggacagagcccgagactacaaacttagtggtctgcaatctgctgcacactaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atctgaagggacagagcccgagactacaaacttagtggtctgcaatctgctgcacactaa 684

                                                               
Query: 485 tctttcttggctggatccaagacataccgagaaagaagcacttgctaatcac 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctttcttggctggatccaagacataccgagaaagaagcacttgctaatcac 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)