BAC Information

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BAC

Clone NameMSMg01-055M14
Chromosome13 (Build37)
Map Location 86,869,256 - 86,869,490
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055M14.T7 (MSMg01no055_m14.b1)MSMg01-055M14.TJ (MSMg01no055_m14.g1)
ACCAG283361AG283362
length713738
length of high quality
(start - end)
236 (123 - 358)417 (78 - 494)
definitionCHROMAT_FILE: MSMg01no055_m14.b1 PHD_FILE: MSMg01no055_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:17 2005CHROMAT_FILE: MSMg01no055_m14.g1 PHD_FILE: MSMg01no055_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAACTATCTCCCATATAGACTCAGTAGCAGTTTAATCATGAAGAGTA
TTGTGTAGAAGGTAGCATCCTGAATCACAAAGTTCTCAAATGTTAAACCA
GTTTATTTTAAATTAAGAATGTTTATACCACAAAATCTGGTTAAGTGTTA
CAAGACAAGGCATAGTTACACATCTTTTTTCTTTTCTTTTCTTTTTTCTC
CTCTTCTCCCATCACTTGTTTTTGGCATTTTCCAGTTTGAACATATAGAT
TCTGCAATGTAAAGTTTAATTCTCTACAGACTAGGTCAAGGGGATATGAT
TATTCTTTTGAGAAAAGAAATAACTGAAGAGGAATGACTCAAACAAATTA
TACATTTATCAATTATCTTTAAATTATATTAAATAAAATAATTGGGTAAT
GACTAGACACTAGGACAGGAATCTCCAATGAAAACAGAAAGCTTCATTGC
AAACAAAAGTAAGCAGCCTCCAAACATTTAAAAAATCTGTGTGAATTTTG
TGGCATGCTTTGCCAAACAGAATTTATTTTCCATGAACTACTTTCTAAGA
ACTAAAAATATGTGGTTGGCTTCCCTCTTCCATTTTTTTATTCACCTCCA
TCAATGTATTTCTCATACATTAGCACAAATGAATAAGGGGTGAAAATAAA
CTCTGAATCTGAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATT
TTTAATAGGTTTATTTGATTTTCTGGAGTCCATCTTCTTGAGTTCTTTGC
ATATAGTAGATATTAGTCCGTTATTGGATTTAGGACTTATAAAGGCCCTT
TCTCAATCTGTTGTAGCCTTTTTGGCTTATTCACAGTATCTTTTGCCTTC
CAGAATCTTTGTGATTTTTATAAGGTCCCATTTGTCCATTCTGGATCTTA
CAGCACAAGACATTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCT
TCCAGGCTTTTCCCCACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTT
TATGTGCAGTTCTTTGATCCACTTAGATGAGCTTTGTCCAAAAAGATAAA
AATGGATCAATTTGTAATCTTCTACATGATAACTGCTGGATGAGCTGGAG
TGACTTGTTGAAAATGCTGTCTTTTTTTCACTGGATGGTTCTAGCCCCCT
TGTCCAAGATCATGTGACCATAGGTGCGTGGGTTCTTTTCTGGATCTTCA
GTTCTATTCCATTGATCTACCTGTCTGTCTCTGTCCCAGTACCATGCAGT
TTTTATCACAATTGCTCTGGAGTACAGCTTGAGATGATGTATGGTGGTTC
CAGCAGAGGCTTCTTTACTGTTGAGAATAGTCTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_m14.b1 MSMg01no055_m14.b1 CHROMAT_FILE:
MSMg01no055_m14.b1 PHD_FILE: MSMg01no055_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:17 2005
         (236 letters)



>mm_chr13_86869056_86869691
          Length = 636

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcacaaagttctcaaatgttaaaccagtttattttaaattaagaatgtttataccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcacaaagttctcaaatgttaaaccagtttattttaaattaagaatgtttataccaca 260

                                                                       
Query: 61  aaatctggttaagtgttacaagacaaggcatagttacacatcttttttcttttcttttct 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatccggttaagtgttacaagacaaggcatagttacacatcttttttcttttcttttct 320

                                                                       
Query: 121 tttttctcctcttctcccatcacttgtttttggcattttccagtttgaacatatagattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tttttctcctcttctcccatcacttgtttttggcattttccagtttgaacatagagattc 380

                                                                  
Query: 181 tgcaatgtaaagtttaattctctacagactaggtcaaggggatatgattattctt 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaatgtaaagtttaattctctacagactaggtcaaggggatatgattattctt 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)