BAC Information

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BAC

Clone NameMSMg01-056E02
Chromosome13 (Build37)
Map Location 91,064,641 - 91,064,796
singlet/doubletsinglet
Overlap genenone
Upstream geneXrcc4, Tmem167, LOC100043170, LOC624190, EG435376, Rps23
Downstream geneAtg10, LOC100042959, Ssbp2, LOC666889, Acot12, Zcchc9, Ckmt2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056E02.T7 (MSMg01no056_e02.b1)MSMg01-056E02.TJ (MSMg01no056_e02.g1)
ACCAG283708AG283709
length704727
length of high quality
(start - end)
291 (55 - 345)210 (77 - 286)
definitionCHROMAT_FILE: MSMg01no056_e02.b1 PHD_FILE: MSMg01no056_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:52 2005CHROMAT_FILE: MSMg01no056_e02.g1 PHD_FILE: MSMg01no056_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGATTT
CCCCAATACTTTTAACATGAAACAGGCTTGCATTTTGTCAAATGCTTTTT
CTGCATCTACCGAGATGATCATGTAATTTTTTTCTTTGACTTTGTTTATA
TAGTGGATTACATTAATAGATTTTCATATATTGAACCAACCTTGCATCCC
TGGGATGAAGCCTACTTGATTGTGATGAATGATGATTTTAATGTGTTCTT
GGATCTGGTTTGCAAGAATTTTATTGAGTATTTTTGAATCGATATTCATA
AGTGAGATTGGTCTGAAATTCTTTTTTGGTTGGGTCCTTGTGTGTCTTAT
GTATCACCCAACCGCGGCTTCAGAGAATGAATTAGGTACTATTCCTTCTG
TTTCTATTTTATAGAACAGTTTGAGGAATGTTGGAATCAGGTGTTCTCTG
AATGTCTGGTAGAATTCTGCACTAAATCCATCTGGTCCTGGCTTCTAAGG
ACTTCTATCTCCCTTATGGGATATGGGCCTGTTTAGATAGTTTACCTTGC
TCTTTATTTAACTTTGGCATGTGGGAACTGCCTATAACACCCCCCATTTC
ATCTACATTTTCCAGTTTTACTAAATATTTATGCATTTCATAGTATGATC
CGAAGATATTTTGAATTTTCCCCCCCTTCCGTCGCTAAGCCCCCCTTTTC
ATTG
CCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTTTCAGCGGAATTCTAGAGGGTAAGATAACAGCTG
CCTGCTCATGGGACTATAATCCCAGCCCTTGGGAGCAAGGGGCAGGAAGA
ATGCTTTGGGTGTGTGGGGAGGGGTGTAATTTGTGTGCATAGTTGTGGAG
AGCTTGGGCTAAAGTAAACTGGGGGACACAGGGAAAGGTTTGAGCAAGGA
AGAATGCATACCTTAAAATTGGTAATTTTTACCTCCAAGGTATACAGTGA
AAGGGGCTGCTGAGAGCTCAAGAGTTAATCACTTGCAAGCTGCAGGACCT
GAGCTCAGATGACCTTCCTCAGTAAATGAAGGAGACACCCCATATCCGCT
TTGCTCTTGCTACTTGAGTCTATTATCTTGCACCTAATCTCTGCAAACCT
TGCCCTCCCAGGTGTTATATTCTCCAGGCAAGATTACATTTCACACCTGG
GCGTGGTGGTGTATACCCTTTACCCCACCACTTGGCAGGCATAGGTAGGT
GAATTTGATTTCGAGGCCTGCCTGATCTATTGAGTGAGTTCCAGCACAGT
CAGTGTTCACCCCCCACAAACCCTGTTTTATAAAAAAAAATCCCAGAATC
GTACCCGGCCTTATATATACACCTCTGCCCCCCCCGCCGAATTTCAAAAA
AAGGCTTTTTAACCCACCTCACTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_e02.g1 MSMg01no056_e02.g1 CHROMAT_FILE:
MSMg01no056_e02.g1 PHD_FILE: MSMg01no056_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:52 2005
         (210 letters)



>mm_chr13_91064389_91064997
          Length = 609

 Score =  281 bits (145), Expect = 3e-80
 Identities = 154/157 (98%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                       
Query: 53  ttgggagcaaggggcaggaagaatgctttgggtgtgtggggaggggtgtaatttgtgtgc 112
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 253 ttgggagcaaggggcaggaagaatgctttgggtgtgt-gggaggggtgtaatttgtgtgc 311

                                                                       
Query: 113 atagttgtggagagcttgggctaaagtaaactgggggacacagggaaaggtttgagcaag 172
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 312 ttagttgtggagagcttgggctaaagtaaactggggggcacagggaaaggtttgagcaag 371

                                                
Query: 173 gaagaatgcataccttaaaattggtaatttttacctc 209
           |||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaagaatgcataccttaaaattggtaatttttacctc 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 609
Length adjustment: 9
Effective length of query: 201
Effective length of database: 600
Effective search space:   120600
Effective search space used:   120600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)