Query= MSMg01no056_n11.b1 MSMg01no056_n11.b1 CHROMAT_FILE:
MSMg01no056_n11.b1 PHD_FILE: MSMg01no056_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:36 2005
(275 letters)
>mm_chr13_55252723_55253397
Length = 675
Score = 480 bits (248), Expect = e-140
Identities = 269/278 (96%), Gaps = 6/278 (2%)
Strand = Plus / Plus
Query: 1 ctatcatttactgatttgctgaggagcaaacaaagacccaca---aaggctgatagacag 57
||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct: 201 ctatcatttactgatttgctgaggagcaaacaaagac--agagacaaggctgatagacag 258
Query: 58 tactgagattcagggctcattcttttctccatcctaacaaaggggacttggcaaatcccc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tactgagattcagggctcattcttttctccatcctaacaaaggggacttggcaaatcccc 318
Query: 118 agggatgtcctggggccttgaacggagaccaaagtgccagaccaatagagagcaggttag 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agggatgtcctggggccttgaacggagaccaaagtgccagaccaatagagagcaggttag 378
Query: 178 actaggaacaggggatgggtgagcaaaggcccagggataggatggggagcaacacaggat 237
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 379 actaggaacaggggatgggtgagcaaagacccagggataggatggggagcaacacaggag 438
Query: 238 gagggaggtctgtacatgtggaccagaccaccatgtca 275
|||| |||||||||||||||||||||||||||||||||
Sbjct: 439 gagg-aggtctgtacatgtggaccagaccaccatgtca 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no056_n11.g1 MSMg01no056_n11.g1 CHROMAT_FILE:
MSMg01no056_n11.g1 PHD_FILE: MSMg01no056_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:36 2005
(294 letters)
>mm_chr13_55377952_55378645
Length = 694
Score = 545 bits (282), Expect = e-160
Identities = 291/294 (98%)
Strand = Plus / Minus
Query: 1 tctgatgctctgtagacacttgttttcaatgtttttgaaagctgatgtccatgaacatcc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 494 tctgatgctctgtagacacttgttttcaatgtttttgaaagctgatgttcatgaacatcc 435
Query: 61 caaattaaacaactgatggccaggaaataagcatatggaattttctgttaaatgcagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 caaattaaacaactgatggccaggaaataagcatatggaattttctgttaaatgcagcag 375
Query: 121 tcttaactttaatagggcattgtttaggatcattcagattatttgcttatttagcctata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcttaactttaatagggcattgtttaggatcattcagattatttgcttatttagcctata 315
Query: 181 ctccctggtttacttattaagacaacaagttgcatatattttatctgctgtcaagagcac 240
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctccctggtttactttttaaggcaacaagttgcatatattttatctgctgtcaagagcac 255
Query: 241 aggctatttccttttgaaggggctatatgaacagttgaaatacgtattttgcta 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aggctatttccttttgaaggggctatatgaacagttgaaatacgtattttgcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
