Query= MSMg01no056_n24.b1 MSMg01no056_n24.b1 CHROMAT_FILE:
MSMg01no056_n24.b1 PHD_FILE: MSMg01no056_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:39 2005
(484 letters)
>mm_chr13_40782006_40782889
Length = 884
Score = 851 bits (440), Expect = 0.0
Identities = 467/476 (98%)
Strand = Plus / Minus
Query: 9 tgggttttcaagcccagctcctgttaaagctgtatggaattggaatctacccttcagaat 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgggttttcaagcccagctcctgttaaagctgtatggaattggaatctacccttcagaat 625
Query: 69 atcatatatcaaagctctccgtggactagtttcaaggccagatccttcttaatttaatat 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atcatatatcaaagctctccgtggactagtttcaaggccagatccttcttaatttaatat 565
Query: 129 taggaaaagtcaactatgctagaaaaccaaaatggcacaaaatgcacccacttatctatt 188
||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taggaaaagtccactgtgatagaaaaccaaaatggcacaaaatgcacccacttatctatt 505
Query: 189 catcaaataactgttcagctaagtgggaaccaggtttcctaggaaagatagctacactgg 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catcaaataactgttcagctaagtgggaaccaggtttcctaggaaagatagctacactgg 445
Query: 249 ggaagaggtatttacacacctgatagggatggcatctaggtaatatgttaatcaaatgag 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaagaggtatttacacacctgatagggatggcatctaggtaatatgttaatcaaatgag 385
Query: 309 gatgctattctaaatgagcacttcacattggcaaagtcatagtctacccaattgtaggtc 368
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 384 aatgctattctaaatgagcacttcacattagcaaggtcatagtctacccaattgtaggtc 325
Query: 369 atagttaacatctttggtctgtaggctgatgatcagagaggcactttgatgtcaagttta 428
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 atagttaacatctttggtctgtaggctgatggtcagagaggcactttgatgtcaagttta 265
Query: 429 tttcccaagtgagagcactcatgaacaaggtagcagaaatgccaggcacagaagct 484
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 tttctcaagtgagagcactcatgaacgaggtagcagaaatgccaggcacagaagct 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_n24.g1 MSMg01no056_n24.g1 CHROMAT_FILE:
MSMg01no056_n24.g1 PHD_FILE: MSMg01no056_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:39 2005
(453 letters)
>mm_chr13_40714526_40715378
Length = 853
Score = 775 bits (401), Expect = 0.0
Identities = 444/465 (95%), Gaps = 14/465 (3%)
Strand = Plus / Plus
Query: 1 tgggaatttttcaggaggtatataaataacagagcccggataggtagggcgggtagttgt 60
||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct: 200 tgggaatttttcagggggtatataaatgacagagcctggataggtagggtgggtagttgt 259
Query: 61 ttggtcagggggcttggttgtagtttattagtagtcgtgctcaaataagaag-aaagaag 119
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 260 ttggtcagggggcttggttgtagtttattagtagtcgtgctcaaataagaagcaaa-aag 318
Query: 120 aa-ttagattctcgagtctctatccttctttctccccaatttagtgatgggggaaggggc 178
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 319 aaattagattctcgagtctctatccttctttctctccaatttagtgatggggggaggggc 378
Query: 179 ggtgaaaccagggggataaagtgtggaataaagaagaacccacaaagtagcaaaggcagg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggtgaaaccagggggataaagtgtggaataaagaagaacccacaaagtagcaaaggcagg 438
Query: 239 caacagctttcttagagcagaggaatataatggatacagtggtcaagctgatgtcttcat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caacagctttcttagagcagaggaatataatggatacagtggtcaagctgatgtcttcat 498
Query: 299 cttgctcccaccaccaatattgagttcacagctccttggtttcagcaagatactgatggg 358
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cttgctcccaccaccaacattgagttcacagctccttggtttcagcaagatactgatggg 558
Query: 359 ggcatcattgtgcaatcaccagaagactgacctcttttcaactttt-----------gtt 407
|||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 559 ggcatcattgtgcaatcaccagaagactgacctcttttcaacttttacggagattttgtt 618
Query: 408 attcctctttcagtgccattcctttttgttgtaacatttttgggg 452
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 attcctctttcagtgccattcctttttgttgtaacatttttgggg 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
