BAC Information

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BAC

Clone NameMSMg01-057B03
Chromosome13 (Build37)
Map Location 119,792,442 - 119,793,044
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
Downstream geneLOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057B03.T7 (MSMg01no057_b03.b1)MSMg01-057B03.TJ (MSMg01no057_b03.g1)
ACCAG284320AG284321
length685682
length of high quality
(start - end)
637 (49 - 685)603 (80 - 682)
definitionCHROMAT_FILE: MSMg01no057_b03.b1 PHD_FILE: MSMg01no057_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:53 2005CHROMAT_FILE: MSMg01no057_b03.g1 PHD_FILE: MSMg01no057_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCTCTGACGAAAAGACTGGGAGGAAGAAGCAGCTCATTATG
AGAAAAAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAG
CCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCG
GCTTCAAGGTCCGCCCTATGCGGAGTCCCCGCCCTGCGTAGTGCGTCAGC
CCTGCGCAGAGAGACAATGCGCAGAGAGGCAATGCGCAGACTCATTCATT
CCCAGAGAGGAACAAAGGAAAATACAACAGGCATTTCCAGTCTTTGAAGG
AGCCGAGGGTGGGCGTGTCCACGCTCCGGTAGAATACGTACAGATTAAAG
AACTTGCCGAGTCGGTCCGTAAATACGGAACCAATGCTAATTTTACCTTG
GTGCAGTTAGACAGGCTCGCCGGCATGGCACTAACTCCTGCCGACTGGCA
AACGGTTGTAAAAGCCGCTCTCCCTAGTATGGGCAAATATATGGAATGGA
GAGCTCTTTGGCATGAAGCTGCACAAGCGCAGGCCCGAGCAAACGCAGCT
GCTTTGACTCCAGAGCAGAGAGATTGGACTTTTGACTTGTTAACGGGTCA
GGGAGCTTATTCTGCTGATCAGACAAACTACCATT
NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGATCACTGTGCACAGGTCA
GTGAGCAGAGCAAATGCTGAAACTATTCCTTCTACCGGTTTTGCAAAGAT
GGGAGACTAAATTAATTATACCACTTTTTAAATTTTGTTTCAGATAATTG
TACTTTAATATAATAACTACACTAAAGTGAATTGGGTGTTATAATTACCT
AAATATTTGCCTTTAATTTTTCTAATGGGTCACTATAAGGAAAATGGGGT
TTGTTTCATAAGGAGTACAGAGAGATTCTAATTACAGAAAAACAAAGAAA
CAAATCAAAACAACCCTGAGATTCTACCTCACACCAGTCATAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCAAAGATGTGGAGGAAAAG
GAACACTCCTCCATTATTGGTGGGATGGCAATCTTGTACAACCACTCTGG
AAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCTGAGAA
TCCCACAATACCTCTTCTGGGCATATATCCAGATGTTCCAATTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGTCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_b03.g1 MSMg01no057_b03.g1 CHROMAT_FILE:
MSMg01no057_b03.g1 PHD_FILE: MSMg01no057_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:54 2005
         (603 letters)



>mm_chr13_119792242_119793244
          Length = 1003

 Score = 1151 bits (595), Expect = 0.0
 Identities = 601/603 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatcactgtgcacaggtcagtgagcagagcaaatgctgaaactattccttctaccggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatcactgtgcacaggtcagtgagcagagcaaatgctgaaactattccttctaccggt 260

                                                                       
Query: 61  tttgcaaagatgggagactaaattaattataccactttttaaattttgtttcagataatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgcaaagatgggagactaaattaattataccactttttaaattttgtttcagataatt 320

                                                                       
Query: 121 gtactttaatataataactacactaaagtgaattgggtgttataattacctaaatatttg 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 gtactttaatataataactacactaaagtgaattgggtgttttaattacctaaatatttg 380

                                                                       
Query: 181 cctttaatttttctaatgggtcactataaggaaaatggggtttgtttcataaggagtaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttaatttttctaatgggtcactataaggaaaatggggtttgtttcataaggagtaca 440

                                                                       
Query: 241 gagagattctaattacagaaaaacaaagaaacaaatcaaaacaaccctgagattctacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagattctaattacagaaaaacaaagaaacaaatcaaaacaaccctgagattctacct 500

                                                                       
Query: 301 cacaccagtcataatggctaagatcaaaaattcaggtgacagcagatgctggcaaagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaccagtcataatggctaagatcaaaaattcaggtgacagcagatgctggcaaagatg 560

                                                                       
Query: 361 tggaggaaaaggaacactcctccattattggtgggatggcaatcttgtacaaccactctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaggaaaaggaacactcctccattattggtgggatggcaatcttgtacaaccactctg 620

                                                                       
Query: 421 gaaatcagtctggtggttcctcagaaaattggacatagtactacctgagaatcccacaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaatcagtctggtggttcctcagaaaattggacatagtactacctgagaatcccacaat 680

                                                                       
Query: 481 acctcttctgggcatatatccagatgttccaattggtaagaaggacacatgctccactat 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 acctcttctgggcatatatccagatgttccaactggtaagaaggacacatgctccactat 740

                                                                       
Query: 541 gttcatagcagccttatttataatagtcagaagctggaaagaacccagatgcccctcaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttcatagcagccttatttataatagtcagaagctggaaagaacccagatgcccctcaac 800

              
Query: 601 aga 603
           |||
Sbjct: 801 aga 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)