Query= MSMg01no057_c16.b1 MSMg01no057_c16.b1 CHROMAT_FILE:
MSMg01no057_c16.b1 PHD_FILE: MSMg01no057_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:01 2005
(570 letters)
>mm_chr13_68764937_68765902
Length = 966
Score = 942 bits (487), Expect = 0.0
Identities = 539/565 (95%), Gaps = 15/565 (2%)
Strand = Plus / Plus
Query: 6 gaattcattttgtctctttccttggtggcgcagctcagactgactttgaatttcaaatct 65
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcattttgtctgtttccttggtggcgcagctcagactgactttgaatttcaaatct 265
Query: 66 tcctgttaagtgctgatacttagaggtgtgagctatcataccgaatatagttaatgttca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcctgttaagtgctgatacttagaggtgtgagctatcataccgaatatagttaatgttca 325
Query: 126 tttccaaatactcacgttttaattctgtaccctgattggatgaactcagagtaccttaac 185
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 326 tttccaaatactcacgttttaattctgtaccctgattggatgaactca----acgttaac 381
Query: 186 ttcccttttgcctacatgacaagcacagtggccaccacagccacgctaatgcagcatctc 245
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 382 ttcccttttgcctacatgacaagcacagtggccaccaca-----------gcagcatctc 430
Query: 246 caacttccatgaagttcatgcctcccacatataaactctcctctaacagtcctgacaact 305
||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 431 tgacttccatggacttcatgcctcccacgtataaactctcctctaacagtcctgacaact 490
Query: 306 ctaggaggtgggtcaggccacagttgtgggtaaggaaactgaggcaggtgccatcacaga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctaggaggtgggtcaggccacagttgtgggtaaggaaactgaggcaggtgccatcacaga 550
Query: 366 ggcagaacgcagagtacaagccaggagtggcttttgggtcctcaacaacacatctcttgc 425
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggcagaaggtagagtacaagccaggagtggcttttgggtcctcaacaacacatctcttgc 610
Query: 426 ctctacctgtgcacgtggtctttgcctgcatgggcttgctgcttctgagtgttctggttg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 611 ctctacctgtgcacgtggtctttgcctgcatgggcttgctgcttctgagtgttctggatg 670
Query: 486 gtgatgtattttgctaccctgttttccagtggattcccttgattttctagagagagcttt 545
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 671 gtgatgtattttgctaccctgttttccagtggattcccttgaatttctagagagagcttt 730
Query: 546 tactcagtctgcactaaaatctcaa 570
|||||||||||||||||||||||||
Sbjct: 731 tactcagtctgcactaaaatctcaa 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 966
Length adjustment: 10
Effective length of query: 560
Effective length of database: 956
Effective search space: 535360
Effective search space used: 535360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_c16.g1 MSMg01no057_c16.g1 CHROMAT_FILE:
MSMg01no057_c16.g1 PHD_FILE: MSMg01no057_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:01 2005
(540 letters)
>mm_chr13_68856137_68857076
Length = 940
Score = 1029 bits (532), Expect = 0.0
Identities = 538/540 (99%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacagagaaaccctgtctcaaaaacaaaacaaaaacaaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 caggacagccagggctacacagagaaaccctgtctcaaaaacaaaacaaaaacaaaaaaa 732
Query: 61 aggcaagatcccatacagcttccagatagatgcttcgggcggatgccttgagtgcttctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aggcaagatcccatacagcttccagatagatgcttcgggcggatgccttgagtgcttctg 672
Query: 121 tcataagtttcccaacattttccaaatgaagtagaaaagagtcgaatgctgttcttgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tcataagtttcccaacattttccaaatgaagtagaaaagagtcgaatgctgttcttgaaa 612
Query: 181 caagacagggagcggctcacagggaagcccttcagcctctgggtttggttggcattggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caagacagggagcggctcacagggaagcccttcagcctctgggtttggttggcattggtt 552
Query: 241 atgttttgttgttccctaaccattaaatcttgttgggtttggtaggatcctctgttcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atgttttgttgttccctaaccattaaatcttgttgggtttggtaggatcctctgttcttc 492
Query: 301 tggtttccacctactgattccattggaactggattaccaattaccgtttctctctattta 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 491 tggtttccacctactgattccattggaactggattaccaattagtgtttctctctattta 432
Query: 361 tacaaagcagtgatttctctgcagattgccatgtgttgagttcagcatcagaccaacaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tacaaagcagtgatttctctgcagattgccatgtgttgagttcagcatcagaccaacaga 372
Query: 421 cacagcaaactcccttttccaagtacatgcatgaagtgcaagaccaacacactcacttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cacagcaaactcccttttccaagtacatgcatgaagtgcaagaccaacacactcacttct 312
Query: 481 gtctgatctgagtccagctccactcccaagatctgattaatctctgcagtacccaagggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtctgatctgagtccagctccactcccaagatctgattaatctctgcagtacccaagggg 252
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
