GCGGCCGCTAAACGACTCCTATATTCAGAAAAGGCGCGGAATTCTCATAC
CCTTTCCATGCAGTCTTAGAGCCCACTTAAACTGAAGGAAGCTGTTTTTC
AGTATATCCTAGGCCACTAGTTTAGGTATTAGAGGATGTTGGTCAGACCT
TCGAAGAAGCAAGTGACAATATTTCTGAAAGTAAAAACAACGAGGCTAGG
AAGTATTACTAGTAACTGTGCTCTGCCTAAGCCTTCACAGATGTTTGCCT
TCATTGGTTGCTGCTATTTTGGGAGTTCAAGCTATCAGCAGGAAACAGGA
GTGGGATTCTTGACTCTCTGATTTAGCAGAATATGTACACTGGAAGAAGC
TTATGTACTAGGAACATAGGATTAGAAAATACCAGCTGTCACAAAATAAT
CAACATGCTTAACTAAAGATATTTCACCACTTTAAAATAACCTGAAACTT
TATTTTAATATTAGAACAGAAATGCACTTTAAGCATCTTTTGTCATTGGA
TTTCGAAGACACAAAAGGCCGTCTTCAGGACTGGACATAAACCTTGTGTG
TTAGGACGGGGCACTTTTAACATTACTATGCCAAGGAACTTGCCTACTAG
CCAAGTTTTTAAAGAAAGAAAACAACTATACTCCTCTTCCACTTACTGCT
AAGGACACTGATTATCGTTAAAGACACAGTGTATGTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCATGTACCCACACAGATATCTAGAACCTCCTGACTTAGAGAACAAT
TCTTACCCACACAGTCCCCAAAAAACAAATGAAAAAAGGAACTGATTAGA
TGGCCTTGATTTATTTACATTGGTCCCATTTTCTCTCTCACACACACACC
CTATTCCATCTCTGTAAAAGAATATGAAGGTTCTTTTTACTTGAAAGGGT
TGAACCTTGAGCGTTTACTATCAGCATTTCTTATTGTTTTTGTACCTACA
AAATATATCTATATCTCAGGGCATTTGAAATGTGGGAGTGTGAGTTTCTT
TTCCCAACAGAAAAATAATAAATTCTGGGTCACTAGAAGGAAGACATTTC
CAAACTGTGTACTACATGAAGGTTGTTATTTGTTGAGATCTACAACAGCC
AGAATGATTCTGAGCAATTAAGATATCAATATAGACCGCTCTAATTCTCT
GGAGGTTTTTTGGATGAATTAGAGAAGCACCCTGGTTTGACTTATGTGTC
CATCCATGAGTTTAATTAGTTCCCCTAGGTAACAACAAAATATTCTTTGT
ACAATGCTCATTACATCTTCAGGGTCTTAGGATAACTTTATGTTAAAACA
CTCTTTCACAGAATCCCTATATAATA

Query= MSMg01no057_i24.b1 MSMg01no057_i24.b1 CHROMAT_FILE:
MSMg01no057_i24.b1 PHD_FILE: MSMg01no057_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:33 2005
         (162 letters)



>mm_chr13_107841293_107841854
          Length = 562

 Score =  313 bits (162), Expect = 3e-90
 Identities = 162/162 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggatgttggtcagaccttcgaagaagcaagtgacaatatttctgaaagtaaaaacaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggatgttggtcagaccttcgaagaagcaagtgacaatatttctgaaagtaaaaacaacg 260

                                                                       
Query: 61  aggctaggaagtattactagtaactgtgctctgcctaagccttcacagatgtttgccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctaggaagtattactagtaactgtgctctgcctaagccttcacagatgtttgccttc 320

                                                     
Query: 121 attggttgctgctattttgggagttcaagctatcagcaggaa 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggttgctgctattttgggagttcaagctatcagcaggaa 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no057_i24.g1 MSMg01no057_i24.g1 CHROMAT_FILE:
MSMg01no057_i24.g1 PHD_FILE: MSMg01no057_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:33 2005
         (225 letters)



>mm_chr13_107995300_107995924
          Length = 625

 Score =  373 bits (193), Expect = e-108
 Identities = 218/227 (96%), Gaps = 4/227 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaggaactgattagatggccttgatttatttacattggtcccattttctctctcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 425 aaaaaggaactgattagatggccttgatttatttacattggtcccattttctctcacaca 366

                                                                       
Query: 61  cacacaccctattccatctctgtaaaagaatatgaaggttctttttacttgaaagggttg 120
           ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 365 cacacaccctagtccatctctgtaaaagaatatgaaggttatttttacttgaaagggttg 306

                                                                       
Query: 121 aaccttgagcgt--ttactatcagcatttcttattgtttttgtacctacaaaatatatct 178
           ||||||| | ||  ||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 305 aaccttg-g-gtgcttactatcagcatttcttattgtttttatacctacaaaatagatct 248

                                                          
Query: 179 atatctcagggcatttgaaatgtgggagtgtgagtttcttttcccaa 225
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atatctcagggcatttgaaatgtgggagtgtgagtttcttttcccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)