Query= MSMg01no058_a18.b1 MSMg01no058_a18.b1 CHROMAT_FILE:
MSMg01no058_a18.b1 PHD_FILE: MSMg01no058_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:12 2005
(578 letters)
>mm_chr13_10869954_10870931
Length = 978
Score = 1021 bits (528), Expect = 0.0
Identities = 564/576 (97%)
Strand = Plus / Minus
Query: 3 tcaattggtttatttgttttcttgatatctaatgttttgagttctttatatatttagtat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tcaattggtttatttgttttcttgatatctaatgttttgagttctttatatatttagtat 547
Query: 63 attaaccctttattggatgtatagttggtaaaaatctttgcccatttcatagactgctgt 122
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 546 attaaccctttattggatgtatagttggtaaaaatctttgcccattccatagactgctgt 487
Query: 123 ttgtccaaatagttttataaaacatcaatgttcatttactgaaacattttacacgcataa 182
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 486 ttgtccaaatagttttataaaacctcaatattcatttactgaaacattttacacgcataa 427
Query: 183 aagtcacctgcaacaatatgattctagataagttatcttaaccatggcattgctaatgaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aagtcacctgcaacaatatgattctagataagttatcttaaccatggcattgctaatgaa 367
Query: 243 aacatagaaaactacttagatctctattaatatatgtttcagttactttcatattactgt 302
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 366 aacatagaaaactacttagatctctcttaatatacgtttcagttactttcatattactgt 307
Query: 303 gataaaactccataaggcaaggcaacttatataaggaaggatttattttgggcttctggt 362
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gataaaactccatcgggcaaggcaacttatataaggaaggatttattttgggcttctggt 247
Query: 363 tccagagtgataaaagtccatccttctcatggtggggaaatgtggcaacagttagggtgg 422
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 246 tccagagtgataaaagtccatccttctcatggtggggaaatatggcagcagttagggtgg 187
Query: 423 tgacagagtgtcagagccatacaagaaagggtaaggcatgaaaatgagttttttggagat 482
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 186 tgatagagtgtcagagccatacaagaaagggtaaggcatgcaaatgagttttttggagat 127
Query: 483 ggcccaccattttgcatggttgtgataggtgagctctgagaggcaaggtcccaagagact 542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 126 ggcccaccattttgcatggttgtgataggtgagctctgagaggcaaggttccaagagact 67
Query: 543 tcatcccagaattgcttcttgatcctgatatgtgtt 578
||||||||||||||||||||||||||||||||||||
Sbjct: 66 tcatcccagaattgcttcttgatcctgatatgtgtt 31
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no058_a18.g1 MSMg01no058_a18.g1 CHROMAT_FILE:
MSMg01no058_a18.g1 PHD_FILE: MSMg01no058_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:12 2005
(474 letters)
>mm_chr13_10748995_10749868
Length = 874
Score = 824 bits (426), Expect = 0.0
Identities = 465/480 (96%), Gaps = 8/480 (1%)
Strand = Plus / Plus
Query: 1 ttctctgcatttctccttatgaactaaaacttcttccaagcttcca-gcccgagtgtggc 59
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 201 ttctctgcatttctccttatgaactaaaacttcttccaagcttccaagct-gagtgtggc 259
Query: 60 attgtagaactgtaatcccagctcctaggaggtaaaggcaggagaatcaggagctcaagt 119
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 260 attgtagaactgtaatcccagctcctaggaggtagaggcaggagaatcaggagctcaagt 319
Query: 120 catcttccacaacacagtgaattcaaagacaacctgaactaatgaagacatgtctcataa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 catcttccacaacacagtgaattcaaagacaacctgaactaatgaagacatgtctcataa 379
Query: 180 aagtaaaaacaaaacaaaacaaaacaaa-caaaaacaaaaacaaaaacaaaaaacaaata 238
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 380 aagtaaaaacaaaacaaaacaaaacaaaacaaaaa-aaaaacaaaaacaaaaaacaaata 438
Query: 239 accaatgagatgtttcagtgcttgctgccaagtctaacaacctgaatttaatccccaaga 298
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 accaatgagatggctcagtgcttgctgccaagtctaacaacctgaatttaatccccaaga 498
Query: 299 cccaaattgaaaggagaaaactggcttccaaagaagttggggtatgtttacaaacacatg 358
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cccaaattaaaaggagaaaactggcttccaaagaagttggggtatgtttacaaacacatg 558
Query: 359 c----gcgcgcacacacacacaaacacacacacacacacacacacacacttaaaatttaa 414
| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 559 catgcgcgcgcacgcacacacacacacacacacacacacacacacacacttaaaatttaa 618
Query: 415 tgtttttaaagaattcaactcctagataattttgctaatattatgaggactaaaagttta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgtttttaaagaattcaactcctagataattttgctaatattatgaggactaaaagttta 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
