Query= MSMg01no058_n01.b1 MSMg01no058_n01.b1 CHROMAT_FILE:
MSMg01no058_n01.b1 PHD_FILE: MSMg01no058_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:10 2005
(226 letters)
>mm_chr13_84477388_84478013
Length = 626
Score = 406 bits (210), Expect = e-118
Identities = 222/226 (98%)
Strand = Plus / Plus
Query: 1 ttataaattattcttcaatattttaaagctgtgtattatatgctttactttataaaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttataaattattcttcaatattttaaagctgtgtattatatgctttactttataaaaata 260
Query: 61 ttgaacatgcaaagcattaagtacagagaaatctcccacaggaaaatcgataacttggtt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaacatgcaaagcattaagtacagagaaatctcccacaggaaaatcgataacttggtt 320
Query: 121 agaaagtttgtcaacccacaagaaaacctacagaatcaactgggttcacagagactcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 agaaagtttgtcaacccacaagaaaacctacagaatcaactgggttcacagggactcaca 380
Query: 181 gagactgaactgacactcatgtaccctgcatgggtctgacctaggc 226
||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 381 gagactgaactgacactcagggaccctgcatgggtctgacctaggc 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space: 133889
Effective search space used: 133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no058_n01.g1 MSMg01no058_n01.g1 CHROMAT_FILE:
MSMg01no058_n01.g1 PHD_FILE: MSMg01no058_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:10 2005
(459 letters)
>mm_chr13_84631238_84632096
Length = 859
Score = 857 bits (443), Expect = 0.0
Identities = 453/459 (98%), Gaps = 5/459 (1%)
Strand = Plus / Minus
Query: 1 ttccatataaggtattgctccaaccccctccccccaaacttcagaggtccactcatagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ttccatataaggtattgctccaaccccctccccccaaacttcagaggtccactcatagct 714
Query: 61 ccttgccccaaaaaacttctcgtttgttgttgtttgtttgtttgtttgtttgtttgtttt 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 713 ccttgccccaaaaaacttctcgtttgttgttg-----ttgtttgtttgtttgtttgtttt 659
Query: 121 taagcacttcttgattggatccgatttgtgtggcccatgtactcctgagtttggaaatgt 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 taagcacttcttgactggatccgatttgtgtggcccatgtactcctgagtttggaaatgt 599
Query: 181 taagactctccaagaacttctgacttctttctgctgttaaacagtttatttagctgggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 taagactctccaagaacttctgacttctttctgctgttaaacagtttatttagctgggaa 539
Query: 241 atttataggatgatgcttgtcctcttgttcttaggatttgtaacttggtagttcatgtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 atttataggatgatgcttgtcctcttgttcttaggatttgtaacttggtagttcatgtct 479
Query: 301 tgcacatacattaggtcatttttacttatcacagttggcattcactgtgacactggaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgcacatacattaggtcatttttacttatcacagttggcattcactgtgacactggaaat 419
Query: 361 ataccccattatttcttttccttctgaaagtgttattagtcacagactgcatctgctcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ataccccattatttcttttccttctgaaagtgttattagtcacagactgcatctgctcat 359
Query: 421 tctttttctcttaattttttagaaatattacttccagct 459
|||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tctttttctcttaattttttagaaatattacttccagct 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
