TTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATCCTTCTGTCTCTTTTCCTACAGATAGATATTCGCTTG
GCCAAGCCTGTGTTTCCTTACAGTCCCATGGTGAGGGCTGGCACAGAGCA
TATAAATATTTGTGGAGGTCAATGACCTTCGCAATACTTGTTTCTGTAGC
TCAGGGGTGGGTGCCCTGGGTTCTATGTGGGATGATGCTGACCCAATTTT
TTGTGTGTTTTGTTTTTACAGATTGACAGATGGCTGAAAAAAAAACCCCA
AAAACCAGAACCTCTCCCCTTTACCCCAACTAACCTTGATATCTGTTTAC
AAGAGGAGTCTGAGAAAGGCCAGGTTTGTTGTGTTTTTTTTTTCTTTAAG
TATGCAGCTAAAATTTAATAAGGACATATCCACTTAAATGGGAGAAAAGA
AAACAAATCACAGCTTTGTCCAAGTGGGGTAGAGAAAGGAGAAGGTATAG
AGGCAAAACCAAGACCGCTAAAAACCCAGAGCCACTATAGCCCCCAGGCC
AGCAACAGAGCCCATGGACATGGTGTCAGACTCATGGGCATCCTGGGCAC
AAATCATCAGCACTGCCACTGACTGAGAAGGTGCTACAGCTCCTTCCAGA
CCCCAGTTCATAACCTCGATTAACATGAGGTGCCACGCTATCCAGGCGGA
TCTG

NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTGAATGGCTAAATGTGG
TGCAAAGAAAGCTGGCCTTGGATGTCTTTCTAGATGCTTGTTGGAGGCTT
GAAGTTTAAGGACCCAGTAGATAGTCCTTGAAGTTTTATGTCCTGCAAGG
ACCACACTCTATGCTAGTGTGCTTGACGGTTGTGACACCGTCAGATCATA
TCAGGAGCTCAGGGTCCCTGGGCAGCCAGAATTATGCCTTCCGTGAATGT
CTATGAGGAGATCTGTGAAGGTATGGAAAACATGTAACTGATACTGCAAG
TGGTTAGACCTAGTGTCTCACCACTCACCCACTGCAGAGCGTACTGAAAG
ACCAAAATTACTGGTTGTCCTGGTTTTGACATTAATGAACTGGTGACCTT
AGAGTCACGGGACATTTCTGGATCCCAGTTGTTTCATCAACGGAGCTCTA
CTCTTCCAGAACCTTCCAGTTCTGAACTCTCGCCTAGCAGATCACTTATT
CCATTGTAGTATTATTTTTCGTAGTGCTGAGGATTGATACTGGTGGCTCC
GTATTGTCGGGGGAGCACTTTTTTTTTACTGATCTCTATCACCAGCTCAG
CATTTTGATTTTATTTAAAGACGAAGTGTTACTCTGTTGTCCAGGATGGT

Query= MSMg01no059_a04.b1 MSMg01no059_a04.b1 CHROMAT_FILE:
MSMg01no059_a04.b1 PHD_FILE: MSMg01no059_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:24 2005
         (462 letters)



>mm_chr13_38584048_38584908
          Length = 861

 Score =  808 bits (418), Expect = 0.0
 Identities = 446/456 (97%), Gaps = 3/456 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatccttctgtctcttttcctacagatagatattcgcttggccaagcctgtgt 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ggaattctatccttctgtttcttttcctacagatagatattcgcttggccaagcctgtgt 598

                                                                       
Query: 64  ttccttacagtcccatggtgagggctggcacagagcatataaatatttgtggaggtcaat 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 597 ttccttacagtcccatggtgagggctggcacagagcatataaatatttgtggaggtaaat 538

                                                                       
Query: 124 gaccttcgcaatacttgtttctgtagctcaggggtgggtgccctgggttctatgtgggat 183
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gaccttcacaatacttgtttctgtagctcaggggtgggtgccctgggttctatgtgggat 478

                                                                       
Query: 184 gatgctgacccaattttttgtgtgttttgtttttacagattgacagatggctgaaaaaaa 243
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gatgctgaccctattttttgtgtgttttgtttttacagattgacagatggctgaaaaaaa 418

                                                                       
Query: 244 aa-ccccaaaaaccagaacctctcccctttaccccaactaaccttgatatctgtttacaa 302
           || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaaccccaaaaaccagaaactctcccctttaccccaactaaccttgatatctgtttacaa 358

                                                                       
Query: 303 gaggagtctgagaaaggccaggtttgttgtgttttttttttctttaagtatgcagctaaa 362
           ||||||||||||||||||||||||||||| |||||||||  |||||||||||||| ||||
Sbjct: 357 gaggagtctgagaaaggccaggtttgttgcgtttttttt--ctttaagtatgcagataaa 300

                                                                       
Query: 363 atttaataaggacatatccacttaaatgggagaaaagaaaacaaatcacagctttgtcca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 atttaataaggacatatccacttaaatgggagaaaagaaaacaaatcacagctttgtcca 240

                                               
Query: 423 agtggggtagagaaaggagaaggtatagaggcaaaa 458
           ||||||||||||||||||||||||||||||||||||
Sbjct: 239 agtggggtagagaaaggagaaggtatagaggcaaaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 861
Length adjustment: 10
Effective length of query: 452
Effective length of database: 851
Effective search space:   384652
Effective search space used:   384652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)