Query= MSMg01no059_a08.b1 MSMg01no059_a08.b1 CHROMAT_FILE:
MSMg01no059_a08.b1 PHD_FILE: MSMg01no059_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:25 2005
(473 letters)
>mm_chr13_54830371_54831244
Length = 874
Score = 777 bits (402), Expect = 0.0
Identities = 423/430 (98%), Gaps = 1/430 (0%)
Strand = Plus / Plus
Query: 4 ggaattctcctggggaca-caaattcctctttctagattcttacaaggcttcacccagtt 62
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcctggggacagcaaattcctctttctagattcttacaaggcttcacccagtt 263
Query: 63 aatttccaagccaaccgaatgccagtgtcccagtttagtcatggctttgaattgttttct 122
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatttccaagccaacagaatgccagtgtcccagtttagtcatggctttgaattgttttct 323
Query: 123 tttgcacatgtgcactggaacacatgtgtaggtgggttcacatgctcctgggcatgtatg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttgcacatgtgcactggaacacatgtgtaggtgggttcacatgctcctgggcatgtatg 383
Query: 183 catgtgctaggccgagtgtatgtgtgtgtgtgtgtatttgcgtattcgtgtaggtggtat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catgtgctaggccgagtgtatgtgtgtgtgtgtgtatttgcgtattcgtgtaggtggtat 443
Query: 243 gtgcatgtgtgtgctaaaaccagtgtagggcattgttccttaggagccacccctcatcct 302
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagcatgtgtgtgctaaaaccagtgtagggcattgttccttaggagccacccctcatcct 503
Query: 303 gctattaaatggagacaggatctcacagtagcctggaactcgcctattaggctgacaggc 362
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 gctattaaatggagacaggatctcacagtagcctggaacttgcctattaggctgacaggc 563
Query: 363 ccagggatacacccgctcccacctcccctttgctgagattacaagtgtatcccaacgtac 422
||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 ccagggatacacctgttcccacctcccctttgctgagattacaagtgtatcccaatgtac 623
Query: 423 ctggtctttt 432
||||||||||
Sbjct: 624 ctggtctttt 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 874
Length adjustment: 10
Effective length of query: 463
Effective length of database: 864
Effective search space: 400032
Effective search space used: 400032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_a08.g1 MSMg01no059_a08.g1 CHROMAT_FILE:
MSMg01no059_a08.g1 PHD_FILE: MSMg01no059_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:25 2005
(605 letters)
>mm_chr13_54919628_54920632
Length = 1005
Score = 1135 bits (587), Expect = 0.0
Identities = 599/605 (99%), Gaps = 4/605 (0%)
Strand = Plus / Minus
Query: 1 cagtgctgcgctgtccctcacaaggaccctccaggctgccctgccctgccctcctcgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 cagtgctgcgctgtccctcacaaggaccctccaggctgccctgccctgccctcctcgtcc 844
Query: 61 cctgccatacacacacacacacacacacacacacacacacaccgtcctctacccctccat 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 cctgccat----acacacacacacacacacacacacacacaccgtcctctacccctccat 788
Query: 121 ggacccggggctgaaggctgttaggtcttccatttaaaactcctcaagcttgcagcacgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ggacccggggctgaaggctgttaggtcttccatttaaaactcctcaagcttgcagcacgg 728
Query: 181 ggagttccttattccctctcagatgtagctgtctgtcagcagtaatagtctctttcgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ggagttccttattccctctcagatgtagctgtctgtcagcagtaatagtctctttcgatt 668
Query: 241 tcatttccttcagctcctgccagccactgccaagcgcctccttcccatcccggcctcacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tcatttccttcagctcctgccagccactgccaagcgcctccttcccatcccggcctcacc 608
Query: 301 cctcctcagcccccaagtcaagggaaaaaaatacatttttgcctttaccatgatgtatgt 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 607 cctcctcagcccccaagtcaagggaaaaaaatacatttttgcctttactatgatgtatgt 548
Query: 361 gatcccataaaatagtgaaacagatatgaaaggttgaggggaggtagataaatggctcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gatcccataaaatagtgaaacagatatgaaaggttgaggggaggtagataaatggctcct 488
Query: 421 attattctaccaatcaaatgaaatacctctccacatcctcatttgaatgataataaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 attattctaccaatcaaatgaaatacctctccacatcctcatttgaatgataataaaact 428
Query: 481 ccgagaggctgctgctctctgttgtcaccaccgctagcagctctgtggctacagaccaag 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ccgagaggctgccgctctctgttgtcaccaccgctagcagctctgtggctacagaccaag 368
Query: 541 gtaaccttggggtgtcctccgcagaggccagcattcggctcctctggctcctctagtctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtaaccttggggtgtcctccgcagaggccagcattcggctcctctggctcctctagtctc 308
Query: 601 cccct 605
|||||
Sbjct: 307 cccct 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
