BAC Information

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BAC

Clone NameMSMg01-059F04
Chromosome13 (Build37)
Map Location 13,417,304 - 13,417,576
singlet/doubletsinglet
Overlap geneLOC630663
Upstream geneActn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049
Downstream geneLOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059F04.T7 (MSMg01no059_f04.b1)MSMg01-059F04.TJ (MSMg01no059_f04.g1)
ACCAG286029AG286030
length694707
length of high quality
(start - end)
276 (46 - 321)354 (74 - 427)
definitionCHROMAT_FILE: MSMg01no059_f04.b1 PHD_FILE: MSMg01no059_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:48 2005CHROMAT_FILE: MSMg01no059_f04.g1 PHD_FILE: MSMg01no059_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:48 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGATGCGCGGA
ATTCCATGAAATGCCTATTTTGAGTGTAATATATATTCATAGAATACATT
AATATGAAAGTCTCCGTGCTTAATTTTTAACTGAAAGAAGTGATGATAGT
AGGGTTTTTTTGTTTGGCTCATCTTTTAAGATGAGGCTCTTACGTAGCTA
GACTAACTGTAGCCAAGGTTGACTTTGGGGTCTTGATCCTCTCTCCTCCT
CCACATCTCAAGTACAGAGATCACAGGCATGAGTTGTGGCACTCAGCATA
CTTGAGTTGTCAACCGGAGCAAATGACAGAATAGTGACATAAAATAAACA
ACTACTTGAGGTATTTCCACTCACATAGAGATGACACAGCCACAGAAAGT
GTCTCTAACAAAACCACCTACTCTAAGCCTCACAATGGGGACATTTCACA
TTGCTCTGATTCTATACTGGTATATCCAGTCATGGGAACACTCTAGCTCT
CAGCTCTCATCTTGATTCTGCTACAGCATAAGCCCTCTGTAACTTATCCA
CCTGTATTAGAGCATATTTCCGTGTCATCTGAAGGAAAATGGGCCCCTAC
ACTCATGGCCTGAATACTTGGTACCTTTATAGGAGCTGTTTCGGAAGACC
AAAGATGTGGCTTCGTCGCGGAACTGTATTTTTTGCCCGCTAGC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCCCTGTATATTAGCCCCGCCCTGAG
GAGAGTAAGGGCTTCTACCCTTTCATGCCAACAATGTCCAGAGAGTCATG
GCACAGGGCTGAGCATTTTGGCCACTGAATGTGAGTTTTTAGGGAGCATA
CCTGTGATGGCCATCTTGGGGCCAGCTGAAGGTAATATTGGAGCCCAATC
CCTGGGAACTAGAAAAGATGTTACAGAAGGCTTTGCTGTCCCCTGACTGT
ATGGACATGGGGGCAGAGCAAAGCTGAAATGGAATGATCACCCAAGAGAC
ATTTGGCTGGCAGCTATAGCTCTCAGACCCTTCTACAGTGGCTGGTGCCT
TCTGTTATTTCTAACAGAAGGCCAAGGGTTTTGTGGACTTCCAAAATGCA
GCCATTGCATTAATATCCCTGGATGAGAGTAAGGAGTTTGGAAGACCTGT
CTTGCCTGGTGTTTGGGCTCTTTGCTGATAAGCAGCATAAAGACCTGTCC
ACCTGCTTCAGTACCATCTTGTACCTGTTCCTGATCTTACCCTGTCCTGG
TGCCTTGACTTTCGATGCAGCGAACCTGTTAACCCTGCCCTGGCCTCTCC
TTTCTCCCATTTTCCCCAAATCCCCTCTATTCTCCTCCTGTCTCGCAATG
CACTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_f04.b1 MSMg01no059_f04.b1 CHROMAT_FILE:
MSMg01no059_f04.b1 PHD_FILE: MSMg01no059_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:48 2005
         (276 letters)



>mm_chr13_13417251_13417926
          Length = 676

 Score =  528 bits (273), Expect = e-154
 Identities = 273/273 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccatgaaatgcctattttgagtgtaatatatattcatagaatacattaatatgaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaattccatgaaatgcctattttgagtgtaatatatattcatagaatacattaatatgaa 267

                                                                       
Query: 64  agtctccgtgcttaatttttaactgaaagaagtgatgatagtagggtttttttgtttggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agtctccgtgcttaatttttaactgaaagaagtgatgatagtagggtttttttgtttggc 207

                                                                       
Query: 124 tcatcttttaagatgaggctcttacgtagctagactaactgtagccaaggttgactttgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tcatcttttaagatgaggctcttacgtagctagactaactgtagccaaggttgactttgg 147

                                                                       
Query: 184 ggtcttgatcctctctcctcctccacatctcaagtacagagatcacaggcatgagttgtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ggtcttgatcctctctcctcctccacatctcaagtacagagatcacaggcatgagttgtg 87

                                            
Query: 244 gcactcagcatacttgagttgtcaaccggagca 276
           |||||||||||||||||||||||||||||||||
Sbjct: 86  gcactcagcatacttgagttgtcaaccggagca 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)