Query= MSMg01no059_f16.b1 MSMg01no059_f16.b1 CHROMAT_FILE:
MSMg01no059_f16.b1 PHD_FILE: MSMg01no059_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:50 2005
(373 letters)
>mm_chr13_11878844_11879615
Length = 772
Score = 638 bits (330), Expect = 0.0
Identities = 363/374 (97%), Gaps = 3/374 (0%)
Strand = Plus / Minus
Query: 1 gctgaccttgaacttgaaatctccctgccttagcctcttggggagctgagataatagacc 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 631 gctgaccttgaacttgaaatctccctaccttagcctcttggggagctgagataatagacc 572
Query: 61 ttaaccactcactgggtttgactctgtttggcttttggggactttgtgtttggttgagtg 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttaaccactcact-ggtttgactctgtttggcttttggggactttgtgtttggttgagtg 513
Query: 121 acagacatgcaacctcagagtgaaaaagaaatatgtagatcctccttttagaaatcaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 acagacatgcaacctcagagtgaaaaagaaatatgtagatcctccttttagaaatcaaag 453
Query: 181 aaggcttctaggtgaactcagatattagaggcacaggagataattgggcaagcagagatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaggcttctaggtgaactcagatattagaggcacaggagataattgggcaagcagagatc 393
Query: 241 acgattatggtctagtcagagactcagcatgtgttaaagtaggtagaagaagaaatggga 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 392 acgattatggtctagtcagagactcagcatgtgtcaaagtaggtagaagaagatatggga 333
Query: 301 cattttcggtggcctgccagtggcacagt-gtggtcacaggttagagatcccccgtgcca 359
||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||
Sbjct: 332 cattttcggtggcctgctagtggcacagtag-ggtcacaggttagagatccaaggtgcca 274
Query: 360 tggtacagatgaag 373
||||||||| ||||
Sbjct: 273 tggtacagaggaag 260
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 772
Length adjustment: 9
Effective length of query: 364
Effective length of database: 763
Effective search space: 277732
Effective search space used: 277732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_f16.g1 MSMg01no059_f16.g1 CHROMAT_FILE:
MSMg01no059_f16.g1 PHD_FILE: MSMg01no059_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:50 2005
(519 letters)
>mm_chr13_11795689_11796606
Length = 918
Score = 938 bits (485), Expect = 0.0
Identities = 506/513 (98%), Gaps = 2/513 (0%)
Strand = Plus / Plus
Query: 8 actgcattcgtgtttactcacagatgagtaatactcagattctgttcgctcataactgtt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 actgcattcgtgtttactcacagatgagtaatactcagattctgttcgctcataactgtt 267
Query: 68 aaaaaaacaaaaacagttgtaacaaacgatcgcttcttcacatttccaaacaatgtagga 127
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaaaaa-caaaaacagttgtaacaaacgatcgcttcttcacatttccaaacaatgtagga 326
Query: 128 ccatgttctatctactcgtctcaaactgggacatcatttattgggttaatattaaaaaat 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccatgttctatctactcgtctcaaactgggacatcatttattgggttaatattaaaaaat 386
Query: 188 aaatgtaataagatatatgttagttaaaatatattcaaagatgaatacaatagactatac 247
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaatgtaataagatatatgatagttaaaatatattcaaagatgaatacaatagactatac 446
Query: 248 aagaaaaggaaaacaaacccaggccagtactcagtaagtctgaaaacatgcttttctttt 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aagaaaaggaaaacaaacccaggccagtactcagtaagtctgaaaacatgcttttctttt 506
Query: 308 atactttttcgttggagttattctttttt-aactgtccttgctgaactatgaatgaacga 366
|||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 507 atactttttcattggagttattctttttttaactgtccttgttgaactatgaatgaacga 566
Query: 367 cactgttggtttttgatctgccacatttttaggtttaatttcatataattagttatgtat 426
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 567 cactgttggtttttgatctgccatatttttaggtttaatttcatataattagttatgtat 626
Query: 427 taagactttgtgatattagtcctccatatagacaacatttcacagttactaatttgtgct 486
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 627 taagactttgtgatattagtcctccatatagacaacatttcaaagttactaatttgtgct 686
Query: 487 acagggaaaagtaattaacaaacttatgtttta 519
|||||||||||||||||||||||||||||||||
Sbjct: 687 acagggaaaagtaattaacaaacttatgtttta 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space: 462172
Effective search space used: 462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
