Query= MSMg01no059_k16.b1 MSMg01no059_k16.b1 CHROMAT_FILE:
MSMg01no059_k16.b1 PHD_FILE: MSMg01no059_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:13 2005
(644 letters)
>mm_chr13_81286931_81287978
Length = 1048
Score = 1100 bits (569), Expect = 0.0
Identities = 624/647 (96%), Gaps = 12/647 (1%)
Strand = Plus / Plus
Query: 5 gaattca-gactcttatcca----ctgagaagtgaagagatgaca-ccagggactgcagg 58
||||||| |||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct: 203 gaattcaagactctta---aaggactgagaagtgaagagatgacaaccagggactgcagg 259
Query: 59 gaggaatggtttccagaagagacaaaaagactttcatctgagtttgtcctccagagatgc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaggaatggtttccagaagagacaaaaagactttcatctgagtttgtcctccagagatgc 319
Query: 119 cataactaggttaaccttcacaaagcctgaagacagtttctactgattaggttaggatca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cataactaggttaaccttcacaaagcctgaagacagtttctactgattaggttaggatca 379
Query: 179 ggatcggcccacaccttccaacggaaaactaagttctactgtgatgaagaaatacaaaca 238
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggatcggcccacaccttccaaaggaaaactaagttctactgtgatgaagaaatacaaaca 439
Query: 239 tttctttccagagattgcatgttggttgcccgctgtgggctgtgggaatttacactgcaa 298
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 440 tttctttccagagattgcatgttggctgcctgctgtgggctgtgggaatttacactgcaa 499
Query: 299 aagtctttgtttgagcctgtgtttgctttaaccatttgcatttcaatcatgttgaggtga 358
||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagtctttgctggaacctatgtttgctttaaccatttgcatttcaatcatgttgaggtga 559
Query: 359 aggttctacttctagcttgttttcctctttacctacagtctcagcacaagaccttgtcag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggttctacttctagcttgttttcctctttacctacagtctcagcacaagaccttgtcag 619
Query: 419 ccttataaatcacttgcttgaatcttaaggcacagacagtgactcactagagctctgtgt 478
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 620 tcttataaatcacttgcttgaatcttaaggcacagacagtgactcacaagagctctgtgt 679
Query: 479 cagatgccaaggatggatggacctatggggtctgggagaagggtcaggggagagccagtc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cagatgccaaggatggatggacctatggggtctgggagaagggtcaggggagagccagtc 739
Query: 539 ctccaacaggagacttgaacaccaagattgcaagcccatcactctggccccaagagacaa 598
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 740 ctccaacaggagacttgaacaccaagattgtaagcccatcactctggccccaagagacaa 799
Query: 599 acct---ttccattcactaactaatttacagtattttacatttataa 642
|||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 800 acctcctttccattcactgactaatttacagtattttacatttataa 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1048
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1038
Effective search space: 658092
Effective search space used: 658092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_k16.g1 MSMg01no059_k16.g1 CHROMAT_FILE:
MSMg01no059_k16.g1 PHD_FILE: MSMg01no059_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:13 2005
(629 letters)
>mm_chr13_81405151_81406179
Length = 1029
Score = 1158 bits (599), Expect = 0.0
Identities = 621/629 (98%), Gaps = 2/629 (0%)
Strand = Plus / Minus
Query: 1 tccttttcaatagagctacagtctcagcttaagagcagacattagttcttatttgtatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tccttttcaatagagctacagtctcagcttaagagcagacattagttcttatttgtatta 712
Query: 61 aagtattgcaaacctggatcttcatgtcatagcatgctaccttgaagtctcttggtagga 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aagtattgcaaacctgaatcttcatgtcatagcatgctaccttgaagtctcttggtagga 652
Query: 121 actatggatgtgtgaaatgcatggtagttatcttctgaatggtgatggcttgacagttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 actatggatgtgtgaaatgcatggtagttatcttctgaatggtgatggcttgacagttat 592
Query: 181 gatctgctttcttgtgaggagatttttgtaattaaacctctaaggctttaatatgtaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gatctgctttcttgtgaggagatttttgtaattaaacctctaaggctttaatatgtaaac 532
Query: 241 gctcctagttttctagtagcttgtcaagttgaaggtcatgttgatttcataagataccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gctcctagttttctagtagcttgtcaagttgaaggtcatgttgatttcataagataccaa 472
Query: 301 aggtctagtgtcatatcttcattagaatgttggaagacagcatgtgtgaaaccgtccact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aggtctagtgtcatatcttcattagaatgttggaagacagcatgtgtgaaaccgtccact 412
Query: 361 cctaagattattctttgcagggttgcttttaattagcattgtgttttctttaaagtatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cctaagattattctttgcagggttgcttttaattagcattgtgttttctttaaagtatct 352
Query: 421 cactattcatagcctctttccagctttaagaatgtggtaagttgccatctctatgaaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cactattcatagcctctttccagctttaagaatgtggtaagttgccatctctatgaaatt 292
Query: 481 ttccatctcatttagccaagcacatgttaatgtttataagctccagtgatctctcctttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttccatctcatttagccaagcacatgttaatgtttataagctccagtgatctctcctttt 232
Query: 541 ccattctttttattaatacttttatccccacctctgtctctctgtctctctctctgtgtg 600
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct: 231 ccattctttttattaatacttttattcccacctctgtctctctgtgtctctctctctgtg 172
Query: 601 tctctctctctctatttctttctctgtgt 629
||||| ||||||||| ||| ||||||||
Sbjct: 171 tctctgtctctctatctct--ctctgtgt 145
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
