ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAGTATAATCCTACACTGTAAATACTTTCTGAGCTATTATGGCT
TCCACCACATGGAAAACATTCATGGCCTCAATCTTCCTTATATTTTACAT
TTATACAGCAATGTGTTAAGAATAGACTATTCTCAATAAAGAGAAAGAAA
GCAAAGTATTTATGTAGGGTTAAAAGTCTTTACCTTTTAGTTTGGAATGT
ATTTTGGTCTTATATTTGAAAAGGAATTACCTGGAGAGTCACCTCAAATC
AAAGCACTTAGTGAGAATCAAAACACTTGCGGACTACTCTTGAATCACTT
TTGAGTAACCTGTGTCAACTATTGAATACCCTATCCCAACCCAAGCCCCA
ACCTTCTGGGTTTTTTTTTTCCAAAAGAAAAACAAAGGATGAGATCAGAG
ACATCATCTTGGGCCTCTTACAGCATAACAAATCAAAGTATCTCAGACTG
CCTTTAAATAGCAAAGTCGGACAGTGAAAAAAATGTTGTTTAGCTCCCAA
CAGCACAGATAATTCACTTCAACCTGGAAATAGCTCTTCTCTAAGGTTTG
TATGAAACTCAGCTTACAGCAGAAATCTGATGTCTCATTGGCATTTGATA
AATTTCATTCTTCAATATATTTTTATGGAAATGAAAGCTTTTTGTGATAT
AAAA

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTTTTA
ATGGGGTTATTAGATTTTCTGAAGTCCACCTTCTTGTGTTCTTTATATAT
ATTGGATATTAGTCCCCTATCTGATTTGGGATAAGTAAAGATCCTTTCCC
AATCTGTTGGTGGTCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTGCAG
AAGCTTTTGCCATATCCAGGGATCCATCCCATAATCAGCTTCCAAACGCT
GACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGATATAG
CTGTCTCTTGTGAGACTATGCCGGGACCTAGCAAACACAGAAGTGGATGC
TCACAGTCAGCTATTGGATGGGTCACACGGCCCCCAATGGAGGAGCTAGA
GAAAATACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAAC
AATATGACCTAACCAGTACCCCGGATCTCTTGTCTCTAGCTGCATATATA
TCAAAAGATGGCCTAGTCAGCCATCACTGGAAAGAGAGGCCCTTTGGACT
TGCAAACTTTATATGCTCCTTACAGGGGAACGCCAGGGCCAAAAAGGGGA
AGTGCTTGGGTAGCCCAAACCCCCTTTTCTCCCGTTTCCCCTTTTCCCCT
CTA

Query= MSMg01no059_p06.b1 MSMg01no059_p06.b1 CHROMAT_FILE:
MSMg01no059_p06.b1 PHD_FILE: MSMg01no059_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:35 2005
         (483 letters)



>mm_chr13_89533235_89534117
          Length = 883

 Score =  843 bits (436), Expect = 0.0
 Identities = 469/480 (97%), Gaps = 2/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagtataatc-ctacactgtaaatactttctgagctattatggcttccaccac 63
           ||||||||||||||| |  |||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 205 gaattcagagtataagcaatacactgtaaatacttgctgagctattatgacttccaccac 264

                                                                       
Query: 64  atggaaaacattcatggcctcaatcttccttatattttacatttatacagcaatgtgtta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atggaaaacattcatggcctcaatcttccttatattttacatttatacagcaatgtgtta 324

                                                                       
Query: 124 agaatagactattctcaataaagagaaagaaagcaaagtatttatgtagggttaaaagtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaatagactattctcaataaagagaaagaaagcaaagtatttatgtagggttaaaagtc 384

                                                                       
Query: 184 tttaccttttagtttggaatgtattttggtcttatatttgaaaaggaattacctggagag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 tttaccttttagtttggaatgtattttggtcttatatttgaaaaggaattatctggagag 444

                                                                       
Query: 244 tcacctcaaatcaaagcacttagtgagaatcaaaacacttgcggactactcttgaatcac 303
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 tcacctcaaatcaaagcacttagtgagaatcaaaacactcgcggactactcttgaatcac 504

                                                                       
Query: 304 ttttgagtaacctgtgtcaactattgaataccctatcccaacccaagccccaaccttctg 363
           |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 ttttgaataacctgtgtcaactattgaataccctatcccaacccaagtcccaaccttctg 564

                                                                       
Query: 364 ggttttttttttccaaaagaaaaacaaaggatgagatcagagacatcatcttgggcctct 423
           || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggtttttttt-ccaaaagaaaaacaaaggatgagatcagagacatcatcttgggcctct 623

                                                                       
Query: 424 tacagcataacaaatcaaagtatctcagactgcctttaaatagcaaagtcggacagtgaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tacagcataacaaatcaaagtatctcagactgcctttaaatagcaaagtcggacagtgaa 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)