XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATAGA
AGTACGCTAATAATACTAGTAAAAGAAAGAACTTGCCAGCAAGAATGAAG
ACGAGCATGCAAAAAGCAAGGGCTTCCTTTTCCAATGTTCTTTCTGTAGG
CTGCTACTAGAAGGTGTGACCCAGATGTGTGATAGATCTTCCCCCCTCAA
ATTATCCAATCAACCAAAATCCCTCACAGACAGTTTGGGCTTTAGTTTCT
TCTAAATGAAGTCAAGCTGGCAATCAAGAATAGCCACCACATCATCTTCA
TTATTTACTTTTTAAGCTACTCTCTCAGTTGTACAAGAACCCTAATTAGC
TAAGCTAACTGATCTACACAGAATATATTTCTACCAAATTCTGTTGGTCA
TCAATCAAATGACCTAGATACGATACAGCTGTGCTGTTGGAGTTTGTTGT
GTGTCAAAACGTTTTCCTGAGGAGATGCAACACACACATCTACTCACCCC
AGATAGGGATCCCACTACAAACTAAAGTACAGATACCACCCTAGTACAAC
TTGGTGAGCCAATGAGTTATTACAAGTACTTACAAGAATATGAATGAGAG
GTTAATTACAGCAACCAAAATGACAACTGCATCACAAAGCCCACCCAACA
TGAGTGACAGCTCACAAATCTGGGAACCTGGCAATTACACAGCTTGCAGG
TAGCTCAACAGGGCAAAGGGTGTCCTTN

CCTTTCTTTATTTTTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCCTTTT
TTCCTTTTTTTTTCTTTTCTTTTTTTGGTTTTTTAAGACAGGGTTTCTCT
GTATAGCCCTGGTTGTCCTGGAACTCACTTTGTAGACTAGGCTGGCCTCG
AACTCAGAAATCCACCTGCCTCTGCTGAGCAGCGTTCTCCAGTGCTGAGT
GCTGATATTAAAGGCGTGCACCACCACGTCCGGCAAGAATTCTTATTAAA
TGAGTTCTGATACGTAAAGGATGCTAAGAGTGTTTTGAATGAGAAACGCC
CCCATACACTCCTGCATTTCAATCTGCGTTCCCCAGCTGTTGGTACTGTC
TGGCCCGATTATGGACCCTTCCCAAGGTAGCCCCCCCCTATAGGATTTTT
GACGTCTGGTGCCGGTTTTGAGGTCTTATGGTCTTATTCTCTCCGTGTTA
TTCTAATCGCTTCCTGACCGACCACGCCACCGTCCCCACCAATTTATCTT
ACCCTGTTAACCTACCTCCTTTGCATTTTTCCCTTTTTCCTTTTTCCCTT
CTTCTTTCTATCCCATTTCCCCCCTTCCTACCTTTCCTTTCTGTATTTAA
CCCACCTCCCACACTACATTCGCCTGCTACCTAACTACTACCGTCAATTC
TTCCTTTACTTTTGT

Query= MSMg01no060_d09.b1 MSMg01no060_d09.b1 CHROMAT_FILE:
MSMg01no060_d09.b1 PHD_FILE: MSMg01no060_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:53 2005
         (661 letters)



>mm_chr13_115270200_115271260
          Length = 1061

 Score = 1168 bits (604), Expect = 0.0
 Identities = 644/658 (97%), Gaps = 2/658 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatagaagtacgctaataatactagtaaaagaaagaacttgccagcaagaatga 64
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 863 gaattccatagaagtatgctaataatactagtgaaagaaagaacttgccagcaagaatga 804

                                                                       
Query: 65  agacgagcatgcaaaaagcaagggcttccttttccaatgttctttctgtaggctgctact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agacgagcatgcaaaaagcaagggcttccttttccaatgttctttctgtaggctgctact 744

                                                                       
Query: 125 agaaggtgtgacccagatgtgtgatagatcttcccccctcaaattatccaatcaaccaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agaaggtgtgacccagatgtgtgatagatcttcccccctcaaattatccaatcaaccaaa 684

                                                                       
Query: 185 atccctcacagacagtttgggctttagtttcttctaaatgaagtcaagctggcaatcaag 244
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 683 atccctcacagacagtttgggctttggttacttctaaatgaagtcaagctggcaatcaag 624

                                                                       
Query: 245 aatagccaccacatcatcttcattatttactttttaagctactctctcagttgtacaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aatagccaccacatcatcttcattatttactttttaagctactctctcagttgtacaaga 564

                                                                       
Query: 305 accctaattagctaagctaactgatctacacagaatatatttctaccaaattctgttggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 accctaattagctaagctaactgatctacacagaatatatttctaccaaattctgttggt 504

                                                                       
Query: 365 catcaatcaaatgacctagatacgatacagctgtgctgttggagtttgttgtgtgtcaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 catcaatcaaatgacctagatacgatacagctgtgctgttggagtttgttgtgtgtcaaa 444

                                                                       
Query: 425 acgttttcctgaggagatgcaacacacacatctactcaccccagatagggatcccactac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acgttttcctgaggagatgcaacacacacatctactcaccccagatagggatcccactac 384

                                                                       
Query: 485 aaactaaagtacagataccaccctagtacaacttggtgagccaatgagtt--attacaag 542
           |||||||| |||| ||||||||| ||| ||||||||||||||||||||||  ||| ||||
Sbjct: 383 aaactaaaatacaaataccacccaagtccaacttggtgagccaatgagttttattgcaag 324

                                                                       
Query: 543 tacttacaagaatatgaatgagaggttaattacagcaaccaaaatgacaactgcatcaca 602
           |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tacttacaggaatatggatgagaggttaattacagcaaccaaaatgacaactgcatcaca 264

                                                                     
Query: 603 aagcccacccaacatgagtgacagctcacaaatctgggaacctggcaattacacagct 660
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 263 aagcccacccaacatgagtgacagctcacaaatctgggaacctggcaactacacagct 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)