BAC Information

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BAC

Clone NameMSMg01-060E01
Chromosome13 (Build37)
Map Location 69,873,190 - 69,873,819
singlet/doubletsinglet
Overlap gene3110006E14Rik
Upstream geneAdcy2, LOC666205, LOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260
Downstream gene4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473, Adamts16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060E01.T7 (MSMg01no060_e01.b1)MSMg01-060E01.TJ (MSMg01no060_e01.g1)
ACCAG286739AG286740
length712863
length of high quality
(start - end)
642 (41 - 682)---
definitionCHROMAT_FILE: MSMg01no060_e01.b1 PHD_FILE: MSMg01no060_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:57 2005CHROMAT_FILE: MSMg01no060_e01.g1 PHD_FILE: MSMg01no060_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAAT
TCTTTCTATGACCACCATACAGGAGTGGCAACAACCACTCCTTGGGATCT
CCAGTTAGGGTTCTCATAAGAGATCAGAGTCATGAGCCAAAGGTGTGAAA
CGGCAGTCTCAGCTAGGCTACCTGAGTCCCTTGCTGCTTTCAGGTGGCAG
GACTTTAGTTGTCACCTACATGACCATCACTGTCACCCTTGGCAAAGCAG
CAGCAGCCAGCTTCCTGTAAAAGGTTTGCAGGCCCCTCAGGACCAAACTA
ACCTTGAGTCTTCATATTTGGATAACAGTTGATCAACAACTGCAAGAGTA
CCATGTTTCTAAGATCTTATTGATGCGGTGAGCTGGCTCCATCAGGTCTT
TTATCACACTCACCTCTCGCTTGTCTCCCTAACTTCCCAGATCTACACCC
CACATCCCCATCTCTCCCAGCTTCTTGTCTAATAACTTACTGTCTGATAT
GCTACTTATATATTCACGGGCCCATCAACTTGTCCCTGAATGACTTAGCA
GAGGCTAAACCTTAAAGGAAATTGACTTTCCCTCCTGCAGAGGCTATAAG
CTGCCAGTATCTTCTCAGCTAGGTATGGGAGCTCTTGACACGCCCCCCTC
CTCCCATTGCTGGAATGTTTACTGGTTTGATCTGGTGCAGGTCTTGCAAA
GGCAACCATGGN
AAACGCCGCCCCCCCCCCCGGCCACTCCCCCCAGCATACAAATTCCTACT
CCCCCCCCTCTCACTACCACACCATTCTCCCCTTCTCTCCTTCCCTCTGC
TCTTCCCCCTCCTTCTCCTCTCCCTCTCTCCCCTCTCCCCCTTTTTAATT
ACTANAATTCTTCCTAATATCCTCTTATTCTCTCCCCCATCTATTTATCT
TAATTTTTTATATCCTTTATCTTTCTTCAATTTATACAATAACAANCCGC
CTTCTTCTCTCCTCTCCCATAAGGATTTTTTTTTGAATTTTTCTCTTTTT
TCTCCTCAAACCCCGCCCCTCCCGCCCCTTTTCCCCCCAGAAAGAAGGGA
TCAAGGTTTTCCTCCACCAAATGAGGCAAAGGGAGAGAAGAGAGAGGAGG
AGGNTAACCGGCCGGGATGTTGTAGCGTTTCAGGAAGTAGAGAAGGAAAG
AGCAAGGTTAGCTTGTGAGTTCNCTAGGAGGAAAACGGAAACTGTGCGGN
TCCTCNGGAGCGGGGGGGCGACGCGCCCACACTCATCCCCNNCGGNNNNN
NNNCAGAGGGTGCCGGAGAGAGGGAGAAGNAGCAGCGNNCACGTCNNTCA
AAGCTTGATGTCTGGCGGCTGCTAGCAANTTAGGGAGTGCACACAATAGA
AGGTCTTGAAGGGAGCAATAAAGAGGGCAAATCCTGTTGTAGGGGAACAC
GGGGGNTCTANACCCCCCGGGGNNCCCCCCGANGGAATGNACCCCTAGGG
CNNTAGCCGGGGGGAGCGCAGGGGGTCCGTAAAAGGGGGTTTGTAAAAAC
AAACCTGTAAATTTAAAGGAGNTAGGTGGGTTAAACATAGGAGAAGAGTG
GGGTAAATAGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_e01.b1 MSMg01no060_e01.b1 CHROMAT_FILE:
MSMg01no060_e01.b1 PHD_FILE: MSMg01no060_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:57 2005
         (642 letters)



>mm_chr13_69873190_69874231
          Length = 1042

 Score = 1218 bits (630), Expect = 0.0
 Identities = 630/630 (100%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctttctatgaccaccatacaggagtggcaacaaccactccttgggatctccagtt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaattctttctatgaccaccatacaggagtggcaacaaccactccttgggatctccagtt 571

                                                                       
Query: 67  agggttctcataagagatcagagtcatgagccaaaggtgtgaaacggcagtctcagctag 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agggttctcataagagatcagagtcatgagccaaaggtgtgaaacggcagtctcagctag 511

                                                                       
Query: 127 gctacctgagtcccttgctgctttcaggtggcaggactttagttgtcacctacatgacca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gctacctgagtcccttgctgctttcaggtggcaggactttagttgtcacctacatgacca 451

                                                                       
Query: 187 tcactgtcacccttggcaaagcagcagcagccagcttcctgtaaaaggtttgcaggcccc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tcactgtcacccttggcaaagcagcagcagccagcttcctgtaaaaggtttgcaggcccc 391

                                                                       
Query: 247 tcaggaccaaactaaccttgagtcttcatatttggataacagttgatcaacaactgcaag 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcaggaccaaactaaccttgagtcttcatatttggataacagttgatcaacaactgcaag 331

                                                                       
Query: 307 agtaccatgtttctaagatcttattgatgcggtgagctggctccatcaggtcttttatca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agtaccatgtttctaagatcttattgatgcggtgagctggctccatcaggtcttttatca 271

                                                                       
Query: 367 cactcacctctcgcttgtctccctaacttcccagatctacaccccacatccccatctctc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cactcacctctcgcttgtctccctaacttcccagatctacaccccacatccccatctctc 211

                                                                       
Query: 427 ccagcttcttgtctaataacttactgtctgatatgctacttatatattcacgggcccatc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ccagcttcttgtctaataacttactgtctgatatgctacttatatattcacgggcccatc 151

                                                                       
Query: 487 aacttgtccctgaatgacttagcagaggctaaaccttaaaggaaattgactttccctcct 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 aacttgtccctgaatgacttagcagaggctaaaccttaaaggaaattgactttccctcct 91

                                                                       
Query: 547 gcagaggctataagctgccagtatcttctcagctaggtatgggagctcttgacacgcccc 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  gcagaggctataagctgccagtatcttctcagctaggtatgggagctcttgacacgcccc 31

                                         
Query: 607 cctcctcccattgctggaatgtttactggt 636
           ||||||||||||||||||||||||||||||
Sbjct: 30  cctcctcccattgctggaatgtttactggt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)