BAC Information

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BAC

Clone NameMSMg01-061B19
Chromosome13 (Build37)
Map Location 35,346,113 - 35,346,454
singlet/doubletsinglet
Overlap genenone
Upstream gene3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061B19.T7 (MSMg01no061_b19.b1)MSMg01-061B19.TJ (MSMg01no061_b19.g1)
ACCAG287398AG287399
length721721
length of high quality
(start - end)
492 (74 - 565)342 (83 - 424)
definitionCHROMAT_FILE: MSMg01no061_b19.b1 PHD_FILE: MSMg01no061_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:00 2005CHROMAT_FILE: MSMg01no061_b19.g1 PHD_FILE: MSMg01no061_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACATGCAACCGCGGA
ATTCTGTTTATTACCTTACCCCTGTGCCAATGAGTTCAAGGCTCTTTCCC
ACCTTCTCTTCTATTAGATTCAGTGTATCTGGTTTTATGTCGGGGTTCTT
GATCCACCTGGACTTGATTTTTGTACAAGGTGACAATTATTGGTCTATTT
TCATTTTTCTACATACAGACAGCCAGTTAAACCAGCATCATTTATTGAAT
ATGGTTTTTTTTACATTGTATATTTTTGGTGTTTTTGTCAAAGATCAAGT
GAGTGAAAGTGTGTAGTTTTGTTTCTGGGTCTCTAATTCTATTCCATTGA
TCAGAAAATGGAGAGATCTCCCATGCGGCAGATTTAGCATAGTAAAAATG
TCCATCTTACCAAAGGCAATCTATAGATTCAATGCAATTCCCATCAAAAT
CCCAACACAATTCTTCAAAGACATAGAAAGAGCAATTCTCAAATTTATCT
GGAAAGGCAAAAAACCCAGAATAGTGAAAACAATCCTTAACAATAAAAGA
ACAGCTGGGGGGAGGGAAGTGGGGAGGATGTTCCGGNTCCTCAACCTTAC
CCCCATCCTTCCTCCTCCCTTCCAAATTTCCACTACCACAACTCCCTTTT
TCTCCTTTCTTTTTTTTTCCCCCACCCCCTTCTTTTTACCCCCCTAACCC
CTCCCCCGGGTACAAAAACCG
NNNAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAAAGCTCTGCAAACC
TTTAGTACACAGTTTGCTAGCCCTTACAGACTTTTGACAGAGATTTCAAG
ACAGTCTAGTACTGTCTGTGCTGCCTGCTTCTTAGTGACCACTTTTATGC
AGATTTGCAATGAGAAAGAGCACACTGAGCAAGGACAAGAACAAAATGTA
CAGCTTAAGGAGAGACAGGGCACCAGGAAGTGTGCTGCTGCTCATGCCGT
TAAAATGAGATTCTCCTAGCTTTATGCTTTTACCGGTTAGAGTCAAAAAG
GGTATTTTCTTATAAAAAACAAACTTTAAGTCCATGAAGGTTCTTCCCAG
GAAGAAGAATAAATTTCCAGTGGATCGCGCCTTTGCAAGTGATGAGGAAA
CAAAGAGCATGTGAGAACAACTGGAAGTGATCTTCCTGGCCTGAGGTCAG
ATCTCCAGCAGGATGCACAGCAGCGAGTCCTTGGGAGAAGGGAGAATCCC
ATGGACCCAGCTAAAATACTTCTGAGGACAGAAGGCAGTGCTAGAAGAGA
GATTATAACCCAAGTCCAGCATTAGGGAAAACCTTTCAGACTCGTGTCTC
GAATATTGACAGACACATTTAGCCCTCACACTTCATAAAGGAAAAGTATG
AATGTTTTCCTGAACCGAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_b19.g1 MSMg01no061_b19.g1 CHROMAT_FILE:
MSMg01no061_b19.g1 PHD_FILE: MSMg01no061_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:00 2005
         (342 letters)



>mm_chr13_35345913_35346654
          Length = 742

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaaagctctgcaaacctttagtacacagtttgctagcccttacagacttttgacagag 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaaagctctgcaaaccttcagtacacagtttgctagcccttacagacttttgacagag 260

                                                                       
Query: 61  atttcaagacagtctagtactgtctgtgctgcctgcttcttagtgaccacttttatgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcaagacagtctagtactgtctgtgctgcctgcttcttagtgaccacttttatgcag 320

                                                                       
Query: 121 atttgcaatgagaaagagcacactgagcaaggacaagaacaaaatgtacagcttaaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgcaatgagaaagagcacactgagcaaggacaagaacaaaatgtacagcttaaggag 380

                                                                       
Query: 181 agacagggcaccaggaagtgtgctgctgctcatgccgttaaaatgagattctcctagctt 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacagagcaccaggaagtgtgctgctgctcatgccgttaaaatgagattctcctagctt 440

                                                                       
Query: 241 tatgcttttaccggttagagtcaaaaagggtattttcttataaaaaacaaactttaagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgcttttaccggttagagtcaaaaagggtattttcttataaaaaacaaactttaagtc 500

                                                     
Query: 301 catgaaggttcttcccaggaagaagaataaatttccagtgga 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgaaggttcttcccaggaagaagaataaatttccagtgga 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)