Query= MSMg01no062_c03.b1 MSMg01no062_c03.b1 CHROMAT_FILE:
MSMg01no062_c03.b1 PHD_FILE: MSMg01no062_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:24 2005
(775 letters)
>mm_chr13_110341089_110342263
Length = 1175
Score = 1400 bits (724), Expect = 0.0
Identities = 757/774 (97%), Gaps = 14/774 (1%)
Strand = Plus / Plus
Query: 5 gaattcttttgctatagttgccct-t--taaattaccatggactgatgatgtaaattaga 61
||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcttttgctatagttgc--tataataaattaccatggactgatgatgtaaattaga 270
Query: 62 accacttacttccttgcagtcctgaccgttagaagtctaagagtgaaatgtcttcaaggt 121
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 271 accatttacttccttgcagtcctgaaggttagaagtctaagagtgaaatgtcttcaaggt 330
Query: 122 tggtttccatgtaagtttctctccttggaaagcaggtgactgtagtctccctagacctcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tggtttccatgtaagtttctctccttggaaagcaggtgactgtagtctccctagacctcc 390
Query: 182 gggtgcctgtgttgggatttctcgtaatataaatatgaattcttctatgttaggttctat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gggtgcctgtgttgggatttctcgtaatataaatatgaattcttctatgttaggttctat 450
Query: 242 gctaatgacctcattctaactaaatgacctctttaacgcactctgttaaagagttactac 301
||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 451 gctaatgacctcattctaactaaatgacctctttaacgcactc----a-----ttactac 501
Query: 302 ataatgccaggtgacatgtggccatgtttcagttgaggactgagtacgcacagtggttat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ataatgccaggtgacatgtggccatgtttcagttgaggactgagtacgcacagtggttat 561
Query: 362 tcctaaatatatatcaccagttactttcttaatttcgctaggtatgatatatgaacaatc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcctaaatatatatcaccagttactttcttaatttcgctaggtatgatatatgaacaatc 621
Query: 422 accaaattttctaacagtgcttttcttatatcttcatcagtaaataaagcatagtagaat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 accaaattttctaacagtgcttttcttatatcttcatcagtaaataaagcatagtagaat 681
Query: 482 aagtgtcttctgaggttcacaggtataagactttagtgtgtaaatttgggggtgtgcagt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aagtgtcttctgaggttcacaggtataagactttagtgtgtaaatttgggggtgtgcagt 741
Query: 542 ttactctgttaacagtccacacattaggtttcttgcctaattcttttcaaaccattccat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttactctgttaacagtccacacattaggtttcttgcctaattcttttcaaaccattccat 801
Query: 602 gtgtatcattctaccttctgaagctagaatcatgtctatccaaagtaaagactgatcata 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gtgtatcattctaccttctgaagctagaatcatgtctatccaaagtaaagactgatcata 861
Query: 662 ttttgagttttattatttcatgggctcatgcaaagtacagggagggctgaggcacgtgat 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ttttgagttttattatttcatgggctcatgcaaagtacagggagggctgaggcacgtgat 921
Query: 722 agttagcacgacgcacacatcatttgaagatactgaaactgttagtgaaagggg 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 agttagcacgacgcacacatcatttgaagatactgaaactgttagtgaaagggg 975
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 775
Length of database: 1175
Length adjustment: 10
Effective length of query: 765
Effective length of database: 1165
Effective search space: 891225
Effective search space used: 891225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_c03.g1 MSMg01no062_c03.g1 CHROMAT_FILE:
MSMg01no062_c03.g1 PHD_FILE: MSMg01no062_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:24 2005
(685 letters)
>mm_chr13_110525307_110526391
Length = 1085
Score = 1122 bits (580), Expect = 0.0
Identities = 628/644 (97%), Gaps = 2/644 (0%)
Strand = Plus / Minus
Query: 43 gatttctgagttcaaggccagcctggtctacaaagtgagttccaggacagccagggct-a 101
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1085 gatttctgagttcaaggccagcctggtctacaaagtgagttccaggacagccagggctaa 1026
Query: 102 tacagagaaaccctgtctcgaaaaaccaaaccaaaaaacaaaaaagagaaacaaaacaaa 161
| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 1025 t-cagagaaaccctgtctcgaaaaaccaaactgaaaaacaaaaaagaaaaacaaaacaaa 967
Query: 162 caaacaaacaaaaaaccttagaggttcaagtgaccttccagcctcagtccctggagtagc 221
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 966 caaacaaataaaaaaccttaaaggttcaagtgaccttccagcctcagtccctggagtagc 907
Query: 222 tgggactgaaggcacacaccatgcacacatggtgaagagtttgccctattaccaggctgg 281
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 906 tgggactaaaggcacacaccatgcacacatggtgaagagtttgccctaggaccaggctgg 847
Query: 282 ggaggagaagctgagatcagtaactgatattctattgggcctttactttaaaattactca 341
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ggaggagaggctgagatcagtaactgatattctattgggcctttactttaaaattactca 787
Query: 342 ggaagacatcactgatcctccacagtacatcactcaatgtccgttatactaagcaaagca 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ggaagacatcactgatcctccacagtacatcactcaatgtccgttatactaagcaaagca 727
Query: 402 ccactgacatcagtggtaggctgggaaagccttttacatttggggaatgcaagttttctc 461
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccattgatatcagtggtaggctgggaaagccttttacatttggggaatgcaagttttctc 667
Query: 462 agactagtttgatttgggaggtaggcatttggtctgaggttccatcagcatccagctttc 521
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 666 agactagagtgatttgggaggtaggcatttagtctgaggttccatcagcatccagctttc 607
Query: 522 cagtatagtaagtgcttctttaaccaacattcatcatcaagcaaaagctagagtactgaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cagtatagtaagtgcttctttaaccaacattcatcatcaagcaaaagctagagtactgaa 547
Query: 582 aacacttagctcaaagtattaccaaatatcaacagtggtgaataacattatagaaaggtt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aacacttagctcaaagtattaccaaatatcaacagtggtgaataacattatagaaaggtt 487
Query: 642 ttatataatgaagaatttagtgaacaagcttgcatagttctttg 685
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttatataatgaagaatttagtgaacaagcttgcatagttctttg 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
