BAC Information

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BAC

Clone NameMSMg01-062C15
Chromosome13 (Build37)
Map Location 6,274,813 - 6,275,607
singlet/doubletsinglet
Overlap genenone
Upstream gene1700016G22Rik, Klf6, LOC100039388
Downstream geneLOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062C15.T7 (MSMg01no062_c15.b1)MSMg01-062C15.TJ (MSMg01no062_c15.g1)
ACCAG288203AG288204
length1,1391,209
length of high quality
(start - end)		796 (85 - 880)748 (91 - 838)
definitionCHROMAT_FILE: MSMg01no062_c15.b1 PHD_FILE: MSMg01no062_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:28 2005CHROMAT_FILE: MSMg01no062_c15.g1 PHD_FILE: MSMg01no062_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTCATATNTTNAACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGACATTAGACACCACCGATCCAAATAACCCAATTAAA
AATGATTTTTCAAAGAGCACCAAATTTTCACAGCCTTTCCTGTGATTTCC
TAATTAATAGCATTCTGGGTCCTGTGGAGTCCTGCCATAGGGAGCTCAAC
AGAGACCTAAACCCAACACGGAACACTCAGTCATCAGGGATTTTTTTTTC
TAGTATGCTACCCAATTTCCAAAAGTCAAATGCTTTCAGAATGTCTCCAC
ATGTATCCCACTCCTCCCTGCCAGCTGTCCTTCTCACACACAACTTCTTC
ACTGAAGCTCAACACTGAGAGCTTGAGTTAATACAGGGACAGATAAGACC
TAGCAAATAACATCAAAGTGGTTTGTGCAGAGTCAGTGACACAGATGAAC
ATCTCACAGTCTTATATCAAAATCACTGTAGTCACACTTAACAAAGGTTA
GAACAACAGTTCATAAAACACAGTTTGTCTTTGCTTTGGTTTCATAGAAA
ACATTTATTTTGTTCATTGAGGACAGATTTATAGACCATGGAGTTAATGA
AACTTGCTCTTCAGAGTCCTTAATTTCTAGAAACTCTAAAGTTCCATGAC
AAGACATATACAATGTGTTTTACTATTTATTATAAATGTGTGGACTTCAT
TTTCATTTATTGTATGTTCATACTTTTAAAAAGGTCTTCATCCTCCAGAT
GTTGTACTTTGCATTCCACAAAATAATGGAGAAAAAAGGTAGCTAATAAT
GTCTGAATGTTTTGGAAGCATAGGTACAAAGAGGCATATGCATGANCGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNTAAAAAAAATTATC
TATTTTTTTTTTTTTATTTTTATTTTTTATTTTTTTATATTTTTTTATTA
TATTATTTTTTTATTTTTCCTTTTCTTATCTTCTTTATCTTTTTTTTTTT
TTCTTCTTTTTTTTTTTTTTTTTTCTCTTCTTCTTTTTTTTTTTATATCT
TTTACACATATTTTCTTCTTATTTTTCTCTTATTATTTCTTTTCTTCTTC
TTTATTTCTTTTTTTTTTTCTTTTTTCTAATATCACTTT

NCCCTTATTTTTTTTTTACCAAGTGAGGCTGGGGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAACTGAGGAATACC
GAATGGCAGAGAAGCACCTGACCAAATGTTCAACATCCTTAACCATCAGG
GAAATGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAAT
GTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAG
AAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCA
CTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTCCTACC
GGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAA
CTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATA
ATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGAT
ACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAA
AGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATC
ATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTC
ACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGAT
ACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGG
ACACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCTTGGAAGGAGTT
ACAGAGACAAAGTTTGGAGCTGAGATTAAAGGGTGGACCATGTAGAGACT
GCCTTATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCAT
TGCATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCT
TGTGAGACTATGCCGGGGCCTAACAAACACAGAAGTGGATGCCCACAGTC
AGCTAATGAATGGATCACAGGGGTTCCCATGTAAGAACTTAGAGAAAGTA
CCCCAAGGAGCTTTAGGGGATCTTGCAACCCTTAAGGGGGATCACCCTTT
TGAAATAAACCCGATACCCGGAAATCCTTTAATCTAACGGCATATGTATC
AAAAAAAGGCCCTAAATCGCCCTTTTTGGGTAAAAAAAAGGNCCCTTTGA
AACCAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_c15.b1 MSMg01no062_c15.b1 CHROMAT_FILE:
MSMg01no062_c15.b1 PHD_FILE: MSMg01no062_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:28 2005
         (796 letters)



>mm_chr13_6274613_6275807
          Length = 1195

 Score = 1394 bits (721), Expect = 0.0
 Identities = 777/796 (97%), Gaps = 1/796 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataacccaattaaaaatgatttttcaaagagcaccaaattttcacagcctttcctgtg 60
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||
Sbjct: 201 aaataacccaattaaaaatgatttttcaaagagca-gaaattttcacagcctttcttgtg 259

                                                                       
Query: 61  atttcctaattaatagcattctgggtcctgtggagtcctgccatagggagctcaacagag 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 260 atttcctaattaatagcattctgggtcctgcggagtcctgccatagggagctcaacagag 319

                                                                       
Query: 121 acctaaacccaacacggaacactcagtcatcagggatttttttttctagtatgctaccca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 320 acctaaacccaacacggaacactcagtcatcagggatttttttttctagtatgctatcca 379

                                                                       
Query: 181 atttccaaaagtcaaatgctttcagaatgtctccacatgtatcccactcctccctgccag 240
           |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 atttcctaaagtcaaatgcttttagaatgtctccacatgtatcccactcctccctgccag 439

                                                                       
Query: 241 ctgtccttctcacacacaacttcttcactgaagctcaacactgagagcttgagttaatac 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgtccttctcacacacgacttcttcactgaagctcaacactgagagcttgagttaatac 499

                                                                       
Query: 301 agggacagataagacctagcaaataacatcaaagtggtttgtgcagagtcagtgacacag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 500 agggacagataagacctagcaaataacatcaaagtggtttgtgcagagtcagtgacgcag 559

                                                                       
Query: 361 atgaacatctcacagtcttatatcaaaatcactgtagtcacacttaacaaaggttagaac 420
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acgaacatctcacagtcttacatcaaaatcactgtagtcacacttaacaaaggttagaac 619

                                                                       
Query: 421 aacagttcataaaacacagtttgtctttgctttggtttcatagaaaacatttattttgtt 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 620 aacagttcataaaacacagtttgtctttgctttggtttcataggaaacatttattttgtt 679

                                                                       
Query: 481 cattgaggacagatttatagaccatggagttaatgaaacttgctcttcagagtccttaat 540
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 680 tattgaggacagatttatagacgatggagttaatgaaacttgctcttcagagtccttaat 739

                                                                       
Query: 541 ttctagaaactctaaagttccatgacaagacatatacaatgtgttttactatttattata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttctagaaactctaaagttccatgacaagacatatacaatgtgttttactatttattata 799

                                                                       
Query: 601 aatgtgtggacttcattttcatttattgtatgttcatacttttaaaaaggtcttcatcct 660
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aatgtgtggactttattttcatttattgtatgttcatacttttaaaaaggtcttcatcct 859

                                                                       
Query: 661 ccagatgttgtactttgcattccacaaaataatggagaaaaaaggtagctaataatgtct 720
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 860 ccagatgttgtactttgcattccacaaaataatagagaaaaaaggtagctaataatgtct 919

                                                                       
Query: 721 gaatgttttggaagcataggtacaaagaggcatatgcatgancgtgtgtgtgtgtgtgtg 780
           |||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 920 gaatgttttggaagcatagccacaaagaggcatatgcatgagcgtgtgtgtgtgtgtgtg 979

                           
Query: 781 tgtgtgtgtgtgtgtg 796
           ||||||||||||||||
Sbjct: 980 tgtgtgtgtgtgtgtg 995


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 796
Length of database: 1195
Length adjustment: 10
Effective length of query: 786
Effective length of database: 1185
Effective search space:   931410
Effective search space used:   931410
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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