Query= MSMg01no062_j06.b1 MSMg01no062_j06.b1 CHROMAT_FILE:
MSMg01no062_j06.b1 PHD_FILE: MSMg01no062_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:19 2005
(260 letters)
>mm_chr13_3852751_3853410
Length = 660
Score = 352 bits (182), Expect = e-101
Identities = 185/186 (99%)
Strand = Plus / Minus
Query: 75 gtggcctggagggcatgggacaaagcctgccagcctctcctggcccacatagcagaccac 134
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 460 gtggcctggagggcatgggacaaagcctgccagcctgtcctggcccacatagcagaccac 401
Query: 135 cccactgcatggacatctgcctagacacacttcccctgtggctgattttcatagaggctt 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cccactgcatggacatctgcctagacacacttcccctgtggctgattttcatagaggctt 341
Query: 195 tgaccacactggtggtttcaagaaagcttccccaatttcacagagactcactggggagag 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgaccacactggtggtttcaagaaagcttccccaatttcacagagactcactggggagag 281
Query: 255 gcacat 260
||||||
Sbjct: 280 gcacat 275
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space: 163401
Effective search space used: 163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no062_j06.g1 MSMg01no062_j06.g1 CHROMAT_FILE:
MSMg01no062_j06.g1 PHD_FILE: MSMg01no062_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:19 2005
(476 letters)
>mm_chr13_3770192_3771067
Length = 876
Score = 874 bits (452), Expect = 0.0
Identities = 470/480 (97%), Gaps = 8/480 (1%)
Strand = Plus / Plus
Query: 1 cccagggacttctcttataaaaagctgggcatttttgtctgggagcctccctgatggtcc 60
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 201 cccagggacttctcttataaaaagctggggacttttgtctgggagcctccctgatggtcc 260
Query: 61 ctatgttatccaccctccaggccctgaacactgtggttgtgtttgggaaagcccatggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatgttatccaccctccaggccctgaacactgtggttgtgtttgggaaagcccatggtt 320
Query: 121 ggggagaggggtcctgctaggaagagaggagtgaggtgccaatgtctacctgctcccttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggagaggggtcctgctaggaagagaggagtgaggtgccaatgtctacctgctcccttc 380
Query: 181 cttgcctgggttctttgcacttccggtctccctttcccttccacatgtgtagaccgctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgcctgggttctttgcacttccggtctccctttcccttccacatgtgtagaccgctcc 440
Query: 241 ttacttacatatcctttggtctctaaatatgggttgggtccagagaccctcctgctttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacttacatatcctttggtctctaaatatgggttgggtccagagaccctcctgctttcc 500
Query: 301 ccacactctgtc----ttttttcattggagctcagtccttgattgccccatttcgcatta 356
|||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacactctgtccccctt----cattggagctcagtccttgattgccccatttcgcatta 556
Query: 357 ccccaaggagacttggcacggtctcctcctgttgggcccttgtccgacaaagcagtagtt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccccaaggagacttggcacggtctcctcctgttgggcccttgtccgacaaagcagtagtt 616
Query: 417 gcttttctgacttctctgtaaagtttcaacagttttgttttctgagaacagagttcccca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcttttctgacttctctgtaaagtttcaacagttttgttttctgagaacagagttcccca 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
