BAC Information

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BAC

Clone NameMSMg01-062P24
Chromosome13 (Build37)
Map Location 59,953,655 - 59,954,035
singlet/doubletsinglet
Overlap genenone
Upstream geneNtrk2, LOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
Downstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062P24.T7 (MSMg01no062_p24.b1)MSMg01-062P24.TJ (MSMg01no062_p24.g1)
ACCAG288843AG288844
length1,1331,165
length of high quality
(start - end)
386 (116 - 501)165 (206 - 370)
definitionCHROMAT_FILE: MSMg01no062_p24.b1 PHD_FILE: MSMg01no062_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:11 2005CHROMAT_FILE: MSMg01no062_p24.g1 PHD_FILE: MSMg01no062_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTCNTNNTAACCATTGGGCGCTAAGACTCCTATGGGAGAGGATCCGC
GGAATTAGCTCATGCGCATCCCTTTAAGCATCTGGNTGCCTGAGGAGCTC
TTGGAATTCTCCTCTCTCTACCCTCACAGGCTGGGCCATCCTGGGATCGA
TGTGTCCATGTTGGGGAATCGAACCCAAGTCCTTGTGCTAGAAGACAAAG
TACTCTTACCCACTGGCCACTTCACCAGCCCCCGAAAAGGCCTTAATAGG
ACCAGCAACATAGCTCAATTGGTAGACTGCACATCTTGCATGCGCAGAGC
CCTAGGCTCAACCCCTAGCAGAATATAGATTTTTAAAAACTAACAATAGA
GTAAATATAAAATCCCCGCATGATGGGACTCGCCTGAAAGTCCATTTCTT
GGGAGTCAGAGTCACCAGCTAGAGACTACAAAAGGCTTTCTTTCAATCTA
TGGAGGCGTAATAACTGAACAGCTATTATGTTCTTAGTACTGTGCTTGGG
AGGCACACAAAGTACAACTGTAAAGGGCTCACAAGCCAAAGTCTTCTCAC
AGGGAACATTTACCCTCGGACTTCATGCTTCAAGATCCACCCATACTCCT
CCTCTGTAGAGCTAAGCGTGCTGACTGACGCCCAGCCCCCACCTCGCTGC
TAGGTGCCTGCTAGTTCTCAAGCCCACTATTAGCTGCTTTTGTGGCCATT
GCCCTGGAAGATGGATACCATCATCCTCCTTTCCCCAAGGAGTTTCACAG
AGACTAGGAATCCTCATAGACTTGCATCAGCTGCTACTAGCATTGAGCAC
ATGTTTCATGCTCACCTAGAATTCCCAGCGTGACTGTATGTGCCTGTGAT
TCTGCGTACAGTGCAGACTCCAAGTGTCGGTGTCCGGTGCTCTATTCTTA
AGATAAGGGCCGTTTTATAGATCCTTTTGAAGTTTCCTAGATTCTTAATC
CCTCGTTTCCATATTATTGGTTTGTGGAAGCCCTTAAGGTAATAATATTG
GTACCACCATTAGTTTTCCCTTTCTTGGTTATAATGTTTTGAATGTCTAA
AACAACCTAGGTAATATGTGCAATTAATTCCTATGTTATATTTAATATTT
TATATGGCGTCTAAATAACAAAATCCTATTTCA
TCATGCTAGCCGGCGGCGCCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCCTTTAAAACAGATNNGNGCTTCCAGAAGGCAGCTACTGCCC
TTTTGTATGACGCACCCGAGTCCTATCTGGTTGGCCGTTTTGAAGATACT
AGCTTGAGTGCTATCCGTGCCAAACATGTAACAGTTATGCCAAAAGATAT
CCAGCTAGCACGCCGCATACACAGAGAACGCGCTTAAGAGTCCACTATGA
GGGGAAACATTTCATTCTCAAAAGGAATTTTTTTCTCTCTTCTTCCTGTT
ATCAGTGGTTCAGAATGTTAGATATTTTTCCATGGGGTCAAAGGTATCTA
AGTATATGATTGTGAGTGCAAACATAGGGTACTTATTCAGGTACTGGCAG
CTTCTTCACACTCCTTTGTGCGTGAATTTTAATATATATGCACGATGCAT
AGCATTAGTGCTAGCAAAATGTTTCAGTGAACACATTTCCACAGTTCAAC
TTTATGACCTGCTGACATTTTCTGGACAATGCCACTATTGGGATTTTTTT
TTCTTAAATAAGTAAATTTCCTACTTGATGGCCAAAATACTCTATGATTG
AAAGATAATAGGACACAACCTATCTAAGGAAGAAAGATACCTTTGTATAG
ATCCATTTTTTGATTGAGAGCTATTTTTGTGCATCCACCCTAAGGTCCCT
TCTCCCACTGTTCTTATGAGCATCGTTCATGTGTAACACCGCTAACATTT
TTCTGATCCCCTGCAAAATTTTCCTTCCACCCCATCATTTTTAATGTAGT
CCTTTGCACTGATTATTGTCTTATCACACGTGTTACCCGCATGGCTTTTT
CTGCCCTCTTGCATCCGACCTCCGGTTTTCCTCAAGGGCAGCTTAATTCC
CCATTCTATCAATAGTTTTCCGGTCCATTTTATTTCTTTTCCCCCCTTTT
TTTACAAATTAACTGTCCCCAACAATCCCCCCATTACTTCCCACCTTGGG
TCCTTTAAATCCACTCCTCTTGTTCTTTTATTTAATCCCTTAAATCCTCT
CTTATATTATAAATACCCTCCGGGCTCTGGCCCTTTGGGGTATTGTCTCT
TAACAAATACCCCTCATTCTCTCCCTTCGTTTTCGTAAACTCTCCATATA
TTTCTCCTGTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_p24.b1 MSMg01no062_p24.b1 CHROMAT_FILE:
MSMg01no062_p24.b1 PHD_FILE: MSMg01no062_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:11 2005
         (386 letters)



>mm_chr13_59953250_59954035
          Length = 786

 Score =  690 bits (357), Expect = 0.0
 Identities = 375/381 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   ccctcacaggctgggccatcctgggatcgatgtgtccatgttggggaatcgaacccaagt 65
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ccctcataggctgggccatcctgggatcgatgtgtccatgttggggaatcgaacccaagt 727

                                                                       
Query: 66  ccttgtgctagaagacaaagtactcttacccactggccacttcaccagcccccgaaaagg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccttgtgctagaagacaaagtactcttacccactggccacttcaccagcccccgaaaagg 667

                                                                       
Query: 126 ccttaataggaccagcaacatagctcaattggtagactgcacatcttgcatgcgcagagc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ccttaataggaccagcaacatagctcaattggtagactgcacatcttgcatgcgcagagc 607

                                                                       
Query: 186 cctaggctcaacccctagcagaatatagatttttaaaaactaacaatagagtaaatataa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cctaggctcaacccctagcagaatatagatttttaaaaactaacaatagagtaaatataa 547

                                                                       
Query: 246 aatccccgcatgatgggactcgcctgaaagtccatttcttgggagtcagagtcaccagct 305
           ||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||
Sbjct: 546 aatccccgcatgatgggactcgcctgaaagtccagcacttgggaggcagagtcaccagct 487

                                                                       
Query: 306 agagactacaaaaggctttctttcaatctatggaggcgtaataactgaacagctattatg 365
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 486 agagactacaaaaggctttctttcaatctatggaggtgtaataactgaacagctattatg 427

                                
Query: 366 ttcttagtactgtgcttggga 386
           |||||||||||||||||||||
Sbjct: 426 ttcttagtactgtgcttggga 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)