BAC Information

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BAC

Clone NameMSMg01-063A20
Chromosome13 (Build37)
Map Location 32,057,118 - 32,057,340
singlet/doubletsinglet
Overlap geneGmds
Upstream geneExoc2, EG432743, LOC100041257, LOC100041266, G630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063A20.T7 (MSMg01no063_a20.b1)MSMg01-063A20.TJ (MSMg01no063_a20.g1)
ACCAG288882AG288883
length803762
length of high quality
(start - end)
---223 (133 - 355)
definitionCHROMAT_FILE: MSMg01no063_a20.b1 PHD_FILE: MSMg01no063_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:15 2005CHROMAT_FILE: MSMg01no063_a20.g1 PHD_FILE: MSMg01no063_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCNNNNCCCCCNNNNNNNNNNNNNNNNNNNNNNCCAACTATTATA
TGGGGGCCAAANACCATATTCCCAAGATCCCNATTAAAATATCCTAACTT
ATATGTTTTATTTTTTCTTGTTCTANNCNACNCTTCCCCCCACCNACNNA
NNACNNATCCNAAAANGCCACTTCAAAACCTAACCTCTTTTTTTTNNNNN
NNAAAATTCCATATATATCTATTTTTTTTTAACCAATCAACCTNNNNNNN
NNNNNNNNNNNNAANAACCCCTTTTTTTTTTTTTTTTNNNNAAAAAACTT
TAAATTTTTTTTTTTTTTTTTTTTTTTTCTTAACAGGGGGGNNNNNNNNN
TTTNNNNCCCNCCCCCCNCTTTTATATTTCATTTTTTCCCCCCCCCCCNN
NNNNCCNNCCAAAAACCCCCNNNNCCNCCNNNNCCCNNCCNCCCCNNNNC
CCCCCCCCCCCCCGNCCCACCCTTTATATCTATTTACTTTTTTAAAAAAA
AATANCCCCCCCCCCNNCNCCCCCCCCCCNCNCCCCCCCCNCCCCCCCCN
NCCCCCNNCCNNCCCNCCCNNCCCCCCCNNNNNNNNNNNCCNNCCCCCCC
CCCCCCCCNNNCCCCNNNCCTCCCCCCCCCTTTCTTCCTTTTTCCTCTCT
TGTTACAATTAGNNNANCCCCCCCCCNNCCCCCCNNCCCNNNNCCCCCCN
NNNCCCCCCNCCCCTCCCCCCCCCCCCCCCCCCNNCCNCTTCNNCCCNCC
CCNCCCNCCCCCCCNNNNNCCNNCCCCCCCCTTTTTCTTCTTTTCTTCTT
TTA
NNNNNNNNNNNNNNNNNNNNNNCCCCNNNNCCCCNNNNNCCCCCCCACCT
TCCCNCTTTCTATGATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGGATTCCTGTTAT
ACTTACACGTGTCTTTTTTGCATGTAGAGTCAAACCATTATCTGTCTCAT
TTTTTTACTGGAGCTGGGAAGAACACCCCAGGAAGTTATGTACATCAGAG
TATCTTCCTAATCATAAAGAGTCTTTATTCTCTTCATTGTCTTCTTTTGC
TTCATTTTCCTCGTGGGTTAATTAAAAGTAACATGTGGTTCTGTAGAGTC
TAAGACAGCAGCATACTATGGCTATTGTATATTTGATGAAGTTTGGTAGG
AGAACAGCATCAACTGCTTGCTGTACCACCTAGCCTCATTGATCTGCTAC
TATATGCCATCCACCATTATAGAAACTCTACATTCGGATTTCATTTTATT
TTTCCAAAAGAAACTTACAAGGGAGGCATTATCACCCCCTCCTTTACAAG
TACCATGATTTGTCCCGCATCCTCACTACGAAGTACCAAAGCTGTCATCC
CAAATTCGCGCTTTGGCCCATCTTTTGACCTTCCTGTCGCCTTTCTACTC
CCTTCTTACGACAGACCCGCACCTCATGCCCTTCATCCACTTCCATCCTT
TTTGCCTCTTTATTTTAATGGTACTTTGCCTACTTTTGATTGTCCTCCCC
CCCCTCTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_a20.g1 MSMg01no063_a20.g1 CHROMAT_FILE:
MSMg01no063_a20.g1 PHD_FILE: MSMg01no063_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:15 2005
         (223 letters)



>mm_chr13_32056918_32057540
          Length = 623

 Score =  416 bits (215), Expect = e-121
 Identities = 221/223 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaggattcctgttatacttacacgtgtcttttttgcatgtagagtcaaaccattatc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 423 tctgaggattcctgttatacttacacgtgtcttttttgcatgtagagtcaaaccatgatc 364

                                                                       
Query: 61  tgtctcatttttttactggagctgggaagaacaccccaggaagttatgtacatcagagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgtctcatttttttactggagctgggaagaacaccccaggaagttatgtacatcagagta 304

                                                                       
Query: 121 tcttcctaatcataaagagtctttattctcttcattgtcttcttttgcttcattttcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcttcctaatcataaagagtctttattctcttcattgtcttcttttgcttcattttcctc 244

                                                      
Query: 181 gtgggttaattaaaagtaacatgtggttctgtagagtctaaga 223
           |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 243 gtgggttaattaaaagtagcatgtggttctgtagagtctaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)