BAC Information

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BAC

Clone NameMSMg01-064B01
Chromosome13 (Build37)
Map Location 64,802,259 - 64,802,663
singlet/doubletsinglet
Overlap genenone
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678
Downstream geneLOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064B01.T7 (MSMg01no064_b01.b1)MSMg01-064B01.TJ (MSMg01no064_b01.g1)
ACCAG289642AG289643
length1,156728
length of high quality
(start - end)
420 (30 - 449)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no064_b01.b1 PHD_FILE: MSMg01no064_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:43 2005CHROMAT_FILE: MSMg01no064_b01.g1 PHD_FILE: MSMg01no064_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTATCATTCGNCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTC
TANACCATAGCACAGGTAGAGCGGCCGGAGGGCAACCTTTGGGAACCTGT
TCTCCCTTTCTACCTTGTTTATGAGGCACATCTCTTTTGTTATTTCTGCC
TCTATGCTACCTGTACATGCAAGTATCTAGATGACTCTCCTGTCTCGGTC
TCCCATTGCACTTTAGGGGTGCTGGAATTGCAGATGTGTACCATCACATC
TGGGTTTCTTTTTATGGGTTCCAGGGATTGAACTCTGGTCATCATTTTTT
GCCCAGTAGAAGCTTTTAGTTGAAGAGCCATCTCCTTGATCCCCAAAAAT
GTGCACCATTGAGTCCTGCCATCCTGATATCGATTTAGCCTGGGATTCTG
TGTGCTAGGAATGGATCTCCTGTGTGATTACAGGGAACACTGCTAATATT
TATCACCCACTTTCAGGGCATCCCAAGGCTCCAATGATAAAAGAAGAGGA
TCATTGGCATAATCTAAGTCAACTTATTTTTCTAGTTTGTGTTGTGTTTT
AGAGTTGTGACACTTTGCTGAATATTTCAGCATAGCACTCCATTAGCCAA
TGGAGAGGAAGGTGCATTTAGAGGTAAGTGAATTCTGATGGCACTATTTG
ATTCCTCATTTTGAGCATATTATGAATAAGCAATTTTTAATCTTTGGTCT
ATGAGATAAGCCAGTCAAGTTTCTTTCACATTTCAGTTGGGTTTCTATCC
TTACCAACAGGAAGTCATTGATTTTGTGGTTTGCTAAAAGAATCATTTTT
TTAAAAATTACCTTCAAAAATGTGTAACATGAGATGATAAGACAGCTCAT
CCGGTAAAGACACTTGTTATGAAGGCTGACCACCTGAGTTTAATCCCCTA
AAACCCCATGTTTAGAAGGAAAAGAACTGACCCCTGCAAGTTGGTCCTCC
GTCCATGCGTGCACCCAAATATCTTGTGTTCCCCCCTCTTCATGTCTTGG
TCCCCCAAATTAAAAAATAATTTCTTTTTTTTTTGGCCTCCTAAAAAAAC
TCCCTCCTGTTCTAAAAGGGTTTTCCTAAATTTTCTTTAAAGAAACTAAA
TATTTTTATTTTTCTCCCCCCCAACATAATGGGGTTCATAATCCTCTTTT
AATTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATTAAAAAACAAAAGCAAGCCT
TCCAGTCTGGGCCAGTGCCCTGAGCAGACCATGGGCTCGAACTATGCAGC
CTGTCCCAAAACACCCAGAGGAAGCTCTACTCCCAGGTGCTCTAACACAC
CCAGGTCCACAGGATCCCAGGAGCTTGGTCACACCAGCATCTCATGATCC
CAGAGGCAACTTGACTTCCAGGAGCTCTGACACACCCAGGATCTCAGGAT
CACAGGATCCCAGAATCACGGGATTATAGAGACAGCTGAACTCTGAGGAG
TTCTGACACTTCATGATTACCCCCCGCCCCGGCTCCAGTCAGATATAGNA
AGGACAGGTAGCACTAGATATATTCAAAAGACAGGAGGCAAGTGTAAGAA
CATAAGCAACAGAAACCAAGGTTACTTGGTCTCATCAGAACCCAATTCCC
CCAGCATAGCAAGTCCTGGATACATCATCACACTGGAAAAGCAAGATTCG
GATCTAAAATCACTTTTCATGGTGATGACAGAGGACATTAAGAAGGACAT
AAATAACTCTCTTAAAGAAAAACAGGAGAACATAGATAAACAGCTAGAAT
CCCTTAAAGAGGAAACACAAAAAGTCGCTTAAAGAATTACAGGAAAATAC
AATCAAACAGGCAAAGGAAATGAACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_b01.b1 MSMg01no064_b01.b1 CHROMAT_FILE:
MSMg01no064_b01.b1 PHD_FILE: MSMg01no064_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:43 2005
         (420 letters)



>mm_chr13_64802045_64802864
          Length = 820

 Score =  762 bits (394), Expect = 0.0
 Identities = 402/405 (99%), Gaps = 1/405 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattctan-accatagcacaggtagagcggccggagggcaacctttgggaacctgttct 74
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattctagcaccatagcacaggtagagcggccggagggcaacctttgggaacctgttct 274

                                                                       
Query: 75  ccctttctaccttgtttatgaggcacatctcttttgttatttctgcctctatgctacctg 134
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 275 ccctttctaccttgtttatgaggcagatctcttttgttatttctgcctctatgctacctg 334

                                                                       
Query: 135 tacatgcaagtatctagatgactctcctgtctcggtctcccattgcactttaggggtgct 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tacatgcaagtatctagatgactctcctgtctcggtctcccattgcactttaggggtgct 394

                                                                       
Query: 195 ggaattgcagatgtgtaccatcacatctgggtttctttttatgggttccagggattgaac 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggaattgcagatgtgtaccatcacatctgggtttctttttatgggttccagggattgaac 454

                                                                       
Query: 255 tctggtcatcattttttgcccagtagaagcttttagttgaagagccatctccttgatccc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tctggtcatcattttttgcccagtagaagcttttagttgaagagccatctccttgatccc 514

                                                                       
Query: 315 caaaaatgtgcaccattgagtcctgccatcctgatatcgatttagcctgggattctgtgt 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 caaaaatgtgcaccattgagtcctgccatcctgatatcgatttagcctgggattctgtgt 574

                                                        
Query: 375 gctaggaatggatctcctgtgtgattacagggaacactgctaata 419
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gctaggaatggatctcctgtgtgattacagggaacactgctaata 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)