Query= MSMg01no064_c04.b1 MSMg01no064_c04.b1 CHROMAT_FILE:
MSMg01no064_c04.b1 PHD_FILE: MSMg01no064_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:49 2005
(415 letters)
>mm_chr9_30876824_30877637
Length = 814
Score = 439 bits (227), Expect = e-127
Identities = 372/429 (86%), Gaps = 21/429 (4%)
Strand = Plus / Minus
Query: 5 gaattcttttattttgggcaaaacaacacagcatcaacatcctcaacaatacataaactt 64
|||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |
Sbjct: 669 gaattcttttattttgtccaaaacagcacagcatcgacatcctcaacaatacataaacct 610
Query: 65 atatataaaatatagaatatcttcaccatttttcatttatatggcagcacaatagtatat 124
|||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct: 609 atatataaaatatagaatatcttcactatttctcctttatatggcagcacaatagtatat 550
Query: 125 gcaagtgaaaatgctgttggtgggacacta--------ctccgagcaatgttctagttag 176
|||| ||||| ||||||||||||||||| | ||| |||||||| ||||||||
Sbjct: 549 gcaaatgaaagtgctgttggtgggacacgaggacacttctctgagcaatgccctagttag 490
Query: 177 ccaggtgtcagcattcaatgacaagtaaaagaaccgtctaaagagagttcctgcaaagct 236
|||||||||||||||||||||| || || |||| |||| | ||||||| ||||||||||
Sbjct: 489 ccaggtgtcagcattcaatgaccaggaagagaaa-gtctcaggagagtttctgcaaagct 431
Query: 237 gggcatatgtacccta-ttctgtactctgccattccatgtgcagcctgacttttttcaat 295
||| ||| ||||| | ||||| || ||||||||||| |||||||||||| || ||||
Sbjct: 430 gggtatacgtacc-tcgttctgcaccctgccattccacatgcagcctgactcttctcaac 372
Query: 296 cacacctcttagcctttggagtggtac-----aggcacaggta-t---tgcctgatacta 346
||||||||||||||| ||||||||| | ||| ||||| | | ||||||||||||
Sbjct: 371 cacacctcttagcctctggagtggtgctataaaggtacaggaaatacctgcctgatacta 312
Query: 347 atttttcaccatgaaaattcaaaatggcttaaaaaaagaatatactggatttcagaagtt 406
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 311 atttttcactatgaaaattcaaaatggcttaaaaaa-gaatatactggatttcagaagtt 253
Query: 407 atttacctt 415
|||||||||
Sbjct: 252 atttacctt 244
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 814
Length adjustment: 9
Effective length of query: 406
Effective length of database: 805
Effective search space: 326830
Effective search space used: 326830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_c04.g1 MSMg01no064_c04.g1 CHROMAT_FILE:
MSMg01no064_c04.g1 PHD_FILE: MSMg01no064_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:49 2005
(386 letters)
>mm_chr13_81261615_81262400
Length = 786
Score = 623 bits (322), Expect = 0.0
Identities = 374/404 (92%), Gaps = 20/404 (4%)
Strand = Plus / Minus
Query: 1 aagtcatgatctgctctgtgcatgaaagacttgcaaggctttgtaaaggaacccaaaacc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aagtcatgaactgctctgtgcatgaaagacttgcaaggctttgtaaaggaacccaaaatt 690
Query: 61 cgaatgagggctttaactttttaattttagaaaatttgtttcattacatatagttattgc 120
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 689 tgaatgagggctttaactttttaattttagaaaaattctttcattacatatagttattgc 630
Query: 121 c--------------------atatatatatatatatgtatatattattaaaaggacaaa 160
| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 629 catatatatatatatatatatatatatatatatatatatatatattattaaaaggacaaa 570
Query: 161 atttttaaatatggcatacttttcagtgtagtctcaaaggtctttcgtacatacacgcat 220
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 attgttaaatatggcatacttttcagtgtagtctcaaaggtctttcgtacatacacgcat 510
Query: 221 gagcatgcacacataaacatacccacaaatgcccccacacacccctgtacatactataag 280
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 509 gagcatgcacacataaacatacccacaagtgcccccacacacccctgtacatactataag 450
Query: 281 tgactttgtttcaagttaacaacttataacaactgtacttacaaaccttcatccccttat 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgactttgtttcaagttaacaacttataacaactgtacttacaaaccttcatccccttat 390
Query: 341 ttacttggaatttgccatggaaacagatgccaagaagagaactg 384
||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 389 ttacttggaatttgccatggaaacagatgccaaaaagagaactg 346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
