BAC Information

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BAC

Clone NameMSMg01-064K20
Chromosome13 (Build37)
Map Location 117,986,096 - 117,986,474
singlet/doubletsinglet
Overlap genenone
Upstream geneIsl1, EG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312
Downstream geneEmb, EG623365, LOC382807, Hcn1, LOC100041695, LOC674926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064K20.T7 (MSMg01no064_k20.b1)MSMg01-064K20.TJ (MSMg01no064_k20.g1)
ACCAG290083AG290084
length1,2001,179
length of high quality
(start - end)
---382 (72 - 453)
definitionCHROMAT_FILE: MSMg01no064_k20.b1 PHD_FILE: MSMg01no064_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:48 2005CHROMAT_FILE: MSMg01no064_k20.g1 PHD_FILE: MSMg01no064_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCGGCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAACTCATATTCCTGGTAATACT
TTTTTGAATAATCTCTTTCTTTTTAGAGAATTTTTTCCAAGATTATGTTT
TTTTTTTTTTAAAACATATTTTTTTTTAATATTTTTTTTTCCTTTTATTG
CATCTTTTTCCCTTCTCTTTTTTATTATTTTCTTTTTAATCCTTTCTCTC
CTTTTTTTATTTAATTTTATTCTCCTCACCTTTCTTTCTTATTCTCTCCC
GCTCTTCTTCTTATACTCTCTTCCAATTTTTTCTCTTTTCTCTTCCTCCT

NNNCCATGATTGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAGAGATCTAGCCCACGTTGGTGTTCTG
CATGGGAAGCAGTTGATACAAGACAAAGCCCCCAGATGCCAAAGTCTTAC
ATGAAGCTTTTATCTCCATCTTCACAATAAGGCTGTGTGGAATTTTATCT
CTGCCTTTGCAGTGGAGCACTAGGGGAGGAATGAGGGAGGACGGCATTCT
CCGCCATCAGGAATGAAATGTCAGTTTTTACTGAAATACTCTTCTGTGCA
GAGAGTTTTATGCCAAAATAATAGTTCATGTTTGATTTAAATGTTTTGTT
AGTTTAAGAAAAACTGTAAGATGTAAAAGTTACATAAAACGAATTCCTCT
CTACTCCTAGCTATGTGGGCACCTGTAATGACAGCCTCACTTCTGTTCCT
TGTTTTTTTCCCCCCCCCGCTAGGTTTCAGATCCTGTAAATAAAAAAAGC
CCGGGCGATATTGTGGCAAAGTAAACAGATGGGCAGAACTCTAATCTAAG
TTCTGATAAATGCAACTTTGTTTCCATTCTCAAAGATGAATGGTTGCCAG
AGCGCCTGTTTAGTTAATAAACATGGGCAGGGCTTGTTAAAGGATTCAAC
GAAAGGGTAAGATTTGCCCTCAGATTCTTGCAAAGAATAAAAGGAGCAAA
ACTGGAGGAATCAGATAAAAAGGGGAGCCTCCTCCTGAAGATGTCCTGCC
CCGTTGGAGCTGCCGGTTCACTCTTATTAGGTTTGTTTTATCTCGCGTAT
CTGACTTTCATCCTTGATCTTGTTTTTTTTAATATTTGAATACTCTTTTT
TAACTTCAAAATAAATATTTTTCTTTTTTTGATTTTTAAATTATCTTATT
TTCTTTTTCATTTTTTATATTTTTTTTTTAACATTTTTTTTTCTTATTTC
TTTTTTTCTTTTTTTTTTTATTTTTTTTTTTTCTTTTTCTATTTTTTTTT
TTTATTTATTTATTTATTATATTTCCTCTCTTCTTTTTTCTTATTATTTT
TTTTTTATTTCCTCCTTTTTTATTTATTTTCTTTTTATTTTTATTTCTAT
TCTATTTTTTATTTCTTTTTTATATTATTATTTTTTTTTCTTAATATATA
TTTTCTTCTATTAATACATTTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_k20.g1 MSMg01no064_k20.g1 CHROMAT_FILE:
MSMg01no064_k20.g1 PHD_FILE: MSMg01no064_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:48 2005
         (382 letters)



>mm_chr13_117985896_117986679
          Length = 784

 Score =  617 bits (319), Expect = 0.0
 Identities = 364/379 (96%), Gaps = 2/379 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagagatctagcccacgttggtgttctgcatgggaagcagttgatacaagacaaagccc 60
           |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||  |
Sbjct: 579 caagagatctagcccatgttggtgttctgcatgcgaagcagttgatacaagacaaagatc 520

                                                                       
Query: 61  ccagatgccaaagtcttacatgaagcttttatctccatcttcacaataaggctgtgtgga 120
             |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 519 agagatgccaaagtcttacatgaaacttttatctccatcttcacaatgaggctgtgtgga 460

                                                                       
Query: 121 attttatctctgcctttgcagtggagcactaggggaggaatgagggaggacggcatt-ct 179
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 459 attttatctctgtctttgcagtggagcactaggggaggaatgagggaggacggcattccc 400

                                                                       
Query: 180 ccgccatcaggaatgaaatgtcagtttttactgaaatactcttctgtgcagagagtttta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccgccatcaggaatgaaatgtcagtttttactgaaatactcttctgtgcagagagtttta 340

                                                                       
Query: 240 tgccaaaataatagttcatgtt-tgatttaaatgttttgttagtttaagaaaaactgtaa 298
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 339 tgccaaaataatagttcatgttatgatttaaatgttttgttagtttaagaaaaactataa 280

                                                                       
Query: 299 gatgtaaaagttacataaaacgaattcctctctactcctagctatgtgggcacctgtaat 358
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 279 gatgtaaaagttacataaaacgaattcctctctacgcctagctatgtgggcacttgtaat 220

                              
Query: 359 gacagcctcacttctgttc 377
           |||||||||||||||||||
Sbjct: 219 gacagcctcacttctgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 784
Length adjustment: 9
Effective length of query: 373
Effective length of database: 775
Effective search space:   289075
Effective search space used:   289075
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)