Query= MSMg01no065_l20.b1 MSMg01no065_l20.b1 CHROMAT_FILE:
MSMg01no065_l20.b1 PHD_FILE: MSMg01no065_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:20 2005
(313 letters)
>mm_chr13_91618436_91619143
Length = 708
Score = 563 bits (291), Expect = e-165
Identities = 306/313 (97%), Gaps = 5/313 (1%)
Strand = Plus / Plus
Query: 1 tatattcacttaaaatcaactataaaatacgtacagatcaattcaattttttttcttgaa 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tatattcacttaaaatcaactataaaatacgtacagatcaatt----tttttttcttgaa 256
Query: 61 taagatagtgtgtgtgtttgtaaaacataactcagagaccatggtcttgatctggtggtt 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 257 taagatagtgtgtgtgtttgtaaaacataactcagaggccatggtcttgatctggtggtt 316
Query: 121 aaatcagccatcttcacatgccactgtttaagtaaaagaaatatttctgctcaatttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaatcagccatcttcacatgccactgtttaagtaaaagaaatatttctgctcaatttcat 376
Query: 181 gaggctttctcagtcaatttctaggttttcctgtgttgtgcatattctcaatagtttggt 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaggctttctcagtcattttctaggttttcctgtgttgtgcatattctcaatagtttggt 436
Query: 241 tgtcctcttgtataatgccagcagctttgactgtatgagttctttctgtatacagtagcc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgtcctcttg-ataatgccagcagctttgactgtatgagttctttctgtatacagtagcc 495
Query: 301 cattgttacttgg 313
|||||||||||||
Sbjct: 496 cattgttacttgg 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 708
Length adjustment: 9
Effective length of query: 304
Effective length of database: 699
Effective search space: 212496
Effective search space used: 212496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_l20.g1 MSMg01no065_l20.g1 CHROMAT_FILE:
MSMg01no065_l20.g1 PHD_FILE: MSMg01no065_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:20 2005
(391 letters)
>mm_chr13_91719916_91720705
Length = 790
Score = 708 bits (366), Expect = 0.0
Identities = 384/390 (98%), Gaps = 1/390 (0%)
Strand = Plus / Minus
Query: 1 cagaacttctttgagtcacaaacaccatggagatgctcacccactcagaggctagtctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cagaacttctttgagtcacaaacaccatggagatgctcacccactcagaggctagtctct 530
Query: 61 actacttcacaaagtactcaagaaaaaattggacagaacaagagaatgggaagagactcc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 accacttcacaaagtactcaagaaaaaattggacagaacaagagaatgggaagagactcc 470
Query: 121 cttggacaacaggtctcgacagcaggaagaacaactctctccaggtaccattttcactaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cttggacaacaggtctcgacagcaggaagaacaactctctccaggtaccattttcactaa 410
Query: 181 gatgcacaaggtttaagctgctgaaagaacagcagtatatagaatgctctcagaaaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gatgcacaaggtttaagctgctgaaagaacagcagtatatagaatgctctcagaaaacaa 350
Query: 241 gttgagtatccatgcagcaggaaaggttaaataaataaaatctgtcccacctgagaaact 300
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 349 gttga-catccatgcagcaggaaaggttaaataaataaaatctgtcccacccgagaaact 291
Query: 301 tagggaatgtcatgatcaaagacctcacctaccactgaataagatgtgcttacctgagac 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tagggaatgtcatgatccaagacctcacctaccactgaataagatgtgcttacctgagac 231
Query: 361 agggaaacaggctgtgcccaatactgaggc 390
||||||||||||||||||||| ||||||||
Sbjct: 230 agggaaacaggctgtgcccaagactgaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 790
Length adjustment: 9
Effective length of query: 382
Effective length of database: 781
Effective search space: 298342
Effective search space used: 298342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
