BAC Information

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BAC

Clone NameMSMg01-065O16
Chromosome13 (Build37)
Map Location 114,677,183 - 114,677,526
singlet/doubletsinglet
Overlap geneArl15
Upstream geneSkiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927
Downstream geneA430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065O16.T7 (MSMg01no065_o16.b1)MSMg01-065O16.TJ (MSMg01no065_o16.g1)
ACCAG291013AG291014
length682688
length of high quality
(start - end)
359 (68 - 426)45 (194 - 238)
definitionCHROMAT_FILE: MSMg01no065_o16.b1 PHD_FILE: MSMg01no065_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:33 2005CHROMAT_FILE: MSMg01no065_o16.g1 PHD_FILE: MSMg01no065_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATCTATAATTGCGGCGCTAATACGACTCCTATATTCAGAAATCCGCGG
AATTCCAGCAGACTTCGCAGAACTTAAGGATTTGAATTTTCCCTCCCCTC
AAAGGGCCTAGCCCTGGCTACACACAGGGCTGTAGAGCAAAACACAGCGT
GGAATGTAAGAAAAACTACAGTTGCCAAACACAATTAGAAATCAACAAAA
TCCTGCCAACCAAAAAAGGCTAGAGACAAAGGCTCGAGGACTAAACAGAA
CGGTGCCTTGAGATGCCGCACCAGAAACTTAAAAACAAATGGCACAATGC
CTTTGAAATCGTGAGGGAAAATAATGCCCGGCCTAGGACTCCATCCGCAC
CCACTAAGGCATCAATCATGAGACTGATAAGAAAGGTCTCAAAATCGTGA
CCTCCCATGCACCCTGGGGTGAGCGAATAAAGAAGACCTGGATGCCAGAG
GGGACCTCACAGGATAAGGGGTCCCCAGCATAGTAATTCAGGGGCCAGGG
CCACCACATATGACAGCCACGCAGCTCTAGACAGCCATCAGATCAAAAAG
AAGCAGATCGGCGGCTCTGGGAGAAGGAAGAGTCACCAAGAACGTTAATC
TGAATGGACTTGATACCATCCTGATTATCACATTAGGAAAAGAAGATCTT
GTTTACTACTCAATTTAGGGGCGAAGGCCGCC
NAACGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCAAATATTTGGAAGTAGATCTACC
AGTCTACTATGTGACCCATTTCAGTCATTCCTTAGCATCAGCCCAAAGGA
CTTGACATCACATTCCATAGACACTTGCTCAGCCATCTTCGTTGCTACCT
TTCTATTCATAACACCTAAAAAATGGAAACAACCTCAGAGAAAAATGGAA
TTTGCAAGTAAATAAGGGAAGCTGATAAGTATTGTAATAAGTGAGGTAAC
CCAGGCCCAGAAACATAAAGGTAGCTTGTTTTCTCTTAGGCAAGGATCCA
AGCTTCCAGCCTTTGGATTTGAATATAAAACTAGGAAATATACAAGGAAC
CAAGAGAAAAGGGACCTTGAAAAAAGACAATAAAAAAAGGGTAGAAAGGA
CTGGAAGGAGAGGGAAAAAATTGCGGGGGGAAAGGGGAAAAAGAAGACCT
TTATAGGAGAGAAGAAAGGAACTACAGAGGGGTAGAGAAGAGGAAGCAAA
AAGGACTAAAGATAATAGAAAAATATTGAGAGAAATTAAATATGGAAGCT
TACTTAAATACATAAAGAGTTCATAATTCGTACATGAAACAAATGGGGGA
AAAAAGTATTCAAAAATAACGGATATTATAAAAAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_o16.b1 MSMg01no065_o16.b1 CHROMAT_FILE:
MSMg01no065_o16.b1 PHD_FILE: MSMg01no065_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:33 2005
         (359 letters)



>mm_chr13_114677183_114677941
          Length = 759

 Score =  658 bits (340), Expect = 0.0
 Identities = 343/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaacttaaggatttgaattttccctcccctcaaagggcctagccctggctacacacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cagaacttaaggatttgaattttccctcccctcaaagggcctagccctggctacacacag 285

                                                                       
Query: 61  ggctgtagagcaaaacacagcgtggaatgtaagaaaaactacagttgccaaacacaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggctgtagagcaaaacacagcgtggaatgtaagaaaaactacagttgccaaacacaatta 225

                                                                       
Query: 121 gaaatcaacaaaatcctgccaaccaaaaaaggctagagacaaaggctcgaggactaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gaaatcaacaaaatcctgccaaccaaaaaaggctagagacaaaggctcgaggactaaaca 165

                                                                       
Query: 181 gaacggtgccttgagatgccgcaccagaaacttaaaaacaaatggcacaatgcctttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gaacggtgccttgagatgccgcaccagaaacttaaaaacaaatggcacaatgcctttgaa 105

                                                                       
Query: 241 atcgtgagggaaaataatgcccggcctaggactccatccgcacccactaaggcatcaatc 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 atcgtgagggaaaataatggccggcctaggactccatccgcacccactaaggcatcaatc 45

                                                       
Query: 301 atgagactgataagaaaggtctcaaaatcgtgacctcccatgca 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  atgagactgataagaaaggtctcaaaatcgtgacctcccatgca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)