BAC Information

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BAC

Clone NameMSMg01-066A14
Chromosome13 (Build37)
Map Location 37,468,400 - 37,468,932
singlet/doubletsinglet
Overlap geneLy86
Upstream geneFars2, LOC666758, Nrn1, F13a1
Downstream geneLOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066A14.T7 (MSMg01no066_a14.b1)MSMg01-066A14.TJ (MSMg01no066_a14.g1)
ACCAG291105AG291106
length706708
length of high quality
(start - end)
545 (40 - 584)537 (75 - 611)
definitionCHROMAT_FILE: MSMg01no066_a14.b1 PHD_FILE: MSMg01no066_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:42 2005CHROMAT_FILE: MSMg01no066_a14.g1 PHD_FILE: MSMg01no066_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAAATCCGCGGAATTCT
CACCTGTTGCACACCAAATGGCTGAGAAGCACCTGAAAAAAAATGTTCAG
CATCCTTAATCATCAGGCAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCATACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAACAGATG
CTGGCGAGGATGTGGAGAAAGAACTCCTCCATTGTTGGTGGGATTGCAAG
CTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGAA
CATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAG
AAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCA
TCCTTATTTATAACAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAAC
AGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACT
CAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGAC
CTGGAGGGCATCATCCTGAGTCAGGTAACCCAATCACAAAAGAACTCACA
TGATATGTACTCACTGATAAGTGGATATTAGCCCAGATACTTAGAATACC
CAAGATACAAGATACAATCTGGCAAACATTTGACACTCCAGAAGAACGAA
TACCAN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTAGGGAGCCATGTGCAGCATCCGC
TACTCAACAGCAGTGGCAATACGCCGACCCAGCCCTGCCTTGCTACTATC
ATGACAGATAAATAGCAGTAAGGAACTAAGGAACTCGAAAGGCCAGACTT
GTAGGCATTGATAGGGCAGAGTGCTGAGAGTATCAAGAGGAAAAGATAGC
CAGTGAGCTGCCTCATCCTGAACAGGTGAACACTTAAGCTAGAAGTGCTG
CTCTGTTGCAAAGGGTGGTCCGGCCCCACTTACAGCAGGCAGAAGGCTGT
AGAGTTCCTTTAGACAGTGCCGTTGAGCCTTGAGTGACCTCCCTGCAGGG
GAAACACGGAGTGCTGAAGTTGTTCTTCTCTATAGGACAGGATATCAGAA
AGCTGTTTCTGGACATAACTCTGATGGCAAAAGGCTCTTCTATTCTGAAC
TACTCCTATCCCCTTTGTGAGGAGGACCAGCCCAAGTTCTCATTCTGTGG
AAGAAGAAAAGGAGGTAAGAAAGCTTACTGACTGCTTGTACCTGACACCA
GGGTCCCAGGGGCCAAAGTCCTGACTCTTCCCCACTCATCTGAGGGCAAC
CCACACCCTATTCATCAGCATCTTGCTGCATAAAAATACCCAGGCATGCT
GTGCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_a14.g1 MSMg01no066_a14.g1 CHROMAT_FILE:
MSMg01no066_a14.g1 PHD_FILE: MSMg01no066_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:42 2005
         (537 letters)



>mm_chr13_37468196_37469132
          Length = 937

 Score = 1007 bits (521), Expect = 0.0
 Identities = 530/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gggagccatgtgcagcatccgctactcaacagcagtggcaatacgccgacccagccctgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gggagccatgtgcagcatccgctactcaacagcagtggcaatacgccaacccagccctgc 264

                                                                       
Query: 65  cttgctactatcatgacagataaatagcagtaaggaactaaggaactcgaaaggccagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgctactatcatgacagataaatagcagtaaggaactaaggaactcgaaaggccagac 324

                                                                       
Query: 125 ttgtaggcattgatagggcagagtgctgagagtatcaagaggaaaagatagccagtgagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtaggcattgatagggcagagtgctgagagtatcaagaggaaaagatagccagtgagc 384

                                                                       
Query: 185 tgcctcatcctgaacaggtgaacacttaagctagaagtgctgctctgttgcaaagggtgg 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcctcatcctgaacaggtggacacttaagctagaagtgctgctctgttgcaaagggtgg 444

                                                                       
Query: 245 tccggccccacttacagcaggcagaaggctgtagagttcctttagacagtgccgttgagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccggccccacttacagcaggcagaaggctgtagagttcctttagacagtgccgttgagc 504

                                                                       
Query: 305 cttgagtgacctccctgcaggggaaacacggagtgctgaagttgttcttctctataggac 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttgagttacctccctgcaggggaaacacggagtgctgaagttgttcttctctataggac 564

                                                                       
Query: 365 aggatatcagaaagctgtttctggacataactctgatggcaaaaggctcttctattctga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggatatcagaaagctgtttctggacataactctgatggcaaaaggctcttctattctga 624

                                                                       
Query: 425 actactcctatcccctttgtgaggaggaccagcccaagttctcattctgtggaagaagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actactcctatcccctttgtgaggaggaccagcccaagttctcattctgtggaagaagaa 684

                                                                
Query: 485 aaggaggtaagaaagcttactgactgcttgtacctgacaccagggtcccaggg 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaggaggtaagaaagcttactgactgcttgtacctgacaccagggtcccaggg 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)