BAC Information

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BAC

Clone NameMSMg01-066A21
Chromosome13 (Build37)
Map Location 102,043,198 - 102,043,440
singlet/doubletsinglet
Overlap genenone
Upstream geneBirc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066A21.T7 (MSMg01no066_a21.b1)MSMg01-066A21.TJ (MSMg01no066_a21.g1)
ACCAG291119AG291120
length610713
length of high quality
(start - end)
30 (55 - 84)243 (78 - 320)
definitionCHROMAT_FILE: MSMg01no066_a21.b1 PHD_FILE: MSMg01no066_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:43 2005CHROMAT_FILE: MSMg01no066_a21.g1 PHD_FILE: MSMg01no066_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCCCATCTAAATTGCGGCGCTAACGACTCACTATATCAAGACCGCGGA
ATCATAATTTCAATATAAATGTCTACTTTGTTGGTATAAAGTTTGAATAC
ATTTTTTTAAAAATCCCAAATTGGCTAAGGATTAAATTTAAAAAAAAAAA
CAATTCCCTTCCCTTTTTTTCCCTCTGGGGAAAAAGGGCCCAAAAACCAT
TTTACCCCACCATCTTTTTTTCCTTGGGGGGGGGGGGTTATAAATTTCCC
CCCCCCCTGGGGGGTATTTTCTTCTTAAAAAAAAAATATCATTTCTTCCC
CCATTATTTTTTTTTTTTTTTTTTATTTTTCCCTCTTCCTCCTTCCTTTT
TTTTCTCTTTTTTTCCCTTTTTTTTTTCCATCCCTTCTTTTCCTTCTTTT
TTTACTATTTCTTCATATAATCTAATTAATTCATAAACCACTTTTTCTCT
TTCATAATCATACCATTTATTTTATCATAAACTATAAATTCATATAATTA
TATTTTCTAATTATTTATTATCTTCTATTAATTATTTTTACTTATATCAC
CACTCAATCCATATAATCATCATAATTCATATTATTATCAAAAATAAAAA
AATTTAAATT
NCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGACGGCACCATCGTTAGAAG
TGCATGTTCCCATTGCTGAGTCAGAAGAATGGAATTGGCTCTAGGCCTAA
TACAAATGAGTGAGTCAAATTAAAGATGATTGCTTCAGAGCAAACCCTAC
TCCTGCGAAGATTAGCGGGGGTGGGGTGGGGTGGGGTATCTCAGCAAATG
TCTATGTCCCATTAATTCATGCAACAATTATGGGACACTCCCCATGTTTC
TAAGTGCTAGGAACAGAATGGTGAATGATAAAGGATTTCATTCTCTCTAC
GCCTATATTATAGTGGACAGCAATAACATATTAGTAGCATCATTTAGATT
ATTATGAGAGTGAGGAAAATTTGACAAATATATCAAAGAATAGCTAATGA
AATCACTTACATTGGACCTATTGCAGACAACAGGATCCACTCTCTTAACT
CAAACAGAAGGCAATTCCACACTGTAGGCTTTCCATATCCAATTTCCATA
ACTATGAATGAGAAATATTTGGGGAAAATGTATCTGTACTGTACACATAC
AGATTTTGTTCTTATTCCCTAAAACATTCGGCAAACAAGTATTTTTTATC
AGGGTAGGTATTATACTAATCTAGAGCTGATTTAACGGTACTGAAAAGGC
TATGAATAAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_a21.g1 MSMg01no066_a21.g1 CHROMAT_FILE:
MSMg01no066_a21.g1 PHD_FILE: MSMg01no066_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:44 2005
         (243 letters)



>mm_chr13_102043104_102043746
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggacggcaccatcgttagaagtgcatgttcccattgctgagtcagaagaatggaattg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 337 aaggacggcaccatcgttagaagtgcatgttcccattgctgagtcagacgaatggaattg 278

                                                                       
Query: 61  gctctaggcctaatacaaatgagtgagtcaaattaaagatgattgcttcagagcaaaccc 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gctctaggcccaatacaaatgagtgagtcaaattaaagatgattgcttcagagcaaaccc 218

                                                                       
Query: 121 tactcctgcgaagattagcgggggtggggtggggtggggtatctcagcaaatgtctatgt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tactcctgcgaagattatcgggggtggggtggggtggggtatctcagcaaatgtctatgt 158

                                                                       
Query: 181 cccattaattcatgcaacaattatgggacactccccatgtttctaagtgctaggaacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cccattaattcatgcaacaattatgggacactccccatgtttctaagtgctaggaacaga 98

              
Query: 241 atg 243
           |||
Sbjct: 97  atg 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)