Query= MSMg01no066_p01.b1 MSMg01no066_p01.b1 CHROMAT_FILE:
MSMg01no066_p01.b1 PHD_FILE: MSMg01no066_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:54 2005
(653 letters)
>mm_chr13_97350962_97352015
Length = 1054
Score = 1174 bits (607), Expect = 0.0
Identities = 636/649 (97%), Gaps = 7/649 (1%)
Strand = Plus / Plus
Query: 5 gaattctattatttttccgac-catgaaacatataaagtaaggctagtgctaggaatact 63
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattatttttcagacacatgaaacatataaagtaaggctagtgctaggaatact 264
Query: 64 tacattactctacatttcttagcccgttagtttggttgattatagtcctacccatctgat 123
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 tacattactctacatttcttagcccgttagtttggttggttatagtcctacccatctgat 324
Query: 124 atgttgaggaataaaaggagtaattaaggtttacgtaagtgcattgttattagagtatct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgttgaggaataaaaggagtaattaaggtttacgtaagtgcattgttattagagtatct 384
Query: 184 tcagataggtgctactcccagcttacatagagatgaaccctaatgggtcatgtgaccatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagataggtgctactcccagcttacatagagatgaaccctaatgggtcatgtgaccatc 444
Query: 244 gatcagtcaggaggatgttatccaaaaaaaaaaaaaaaaaaaaaaacagtaccctaaaat 303
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 445 gatcagtcaggaggatgttatcc------aaaaaaaaaaaaaacaacagtaccctaaaat 498
Query: 304 gtttagaatagccctctatttctagttaatatcggcttttttcacggctatagagttatg 363
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 499 gtttagaatagccctctatttctagttaatattggcttttttcacggctatagagttatg 558
Query: 364 tatcttccccatatggttaaatctgacaagtcttatggtgcgtttcaaatccaccctgca 423
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 559 tatcttccccatatggttaaatctgacaagtcttatggtgtgtttcaaatccaccctgca 618
Query: 424 aattttcttcttgcgtttattttacgggtttctgtggtattttacatgagaaaaaaatag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aattttcttcttgcgtttattttacgggtttctgtggtattttacatgagaaaaaaatag 678
Query: 484 aaaaaccctacttttagtcttacaaacctaaacaattactcttcatttaaaaccattttt 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 679 aaaaaccctacttttagtcttacaaacctaaacaattactcttcatttaaaaccatttct 738
Query: 544 ttatgtacattttccctttcagttcattatttatgagtgaggatttgatgatgtcacaga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttatgtacattttccctttcagttcattatttatgagtgaggatttgatgatgtcacaga 798
Query: 604 acagaattcctttttgccacctataaaaacactgtgctaccaaatctgc 652
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 acagaattcctttttgccacctataaaaacactgtgctaccaaatctgc 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_p01.g1 MSMg01no066_p01.g1 CHROMAT_FILE:
MSMg01no066_p01.g1 PHD_FILE: MSMg01no066_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:54 2005
(623 letters)
>mm_chr13_97496219_97497241
Length = 1023
Score = 1166 bits (603), Expect = 0.0
Identities = 618/623 (99%)
Strand = Plus / Minus
Query: 1 caccccatccatccactctttccaaactctcccccagcaagcatgtggattggagaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 caccccatccatccactctttccaaactctcccccagcaagcatgtggattggagaaaac 764
Query: 61 atgacttatgcttctgatgggcggcctctgcacacacgtaaaggagtattgattacagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 atgacttatgcttctgatgggcggcctctgcacacacgtaaaggagtattgattacagcc 704
Query: 121 agtttatgcttccttgtcctatcaagttattgggtcactccatcttttctgggaaaaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 agtttatgcttccttgtcctatcaagttattgggtcactccatcttttctgggaaaaccc 644
Query: 181 aaggagtggactgaaagacatgtcacactgataaaactgtctggacaagatcatttcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aaggagtggactgaaagacatgtcacactgataaaactgtctggacaagatcatttcaga 584
Query: 241 actgggacaaagcagttctctcccctcccatccacctatttcaatgcacatgtgagagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 actgggacaaagcagttctctcccctcccatccacctatttcaatgcacatgtgagagta 524
Query: 301 cgcatatgtgtgcacatgccatatgcaaaagctacatgtttaaaacaatatagtaagtat 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cgcacatgtgtgcacatgccatatgcaaaagctacatgtttaaaacaatatagtaagtat 464
Query: 361 attagacaatatgagaacaattgtttttctggatgatgaggaaaaagaaaagaatcaaaa 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 attagaaaatatgagaacaattgtttttctggatgatgaggaaaaagaaaagaatcaaaa 404
Query: 421 tttccaatattttttccctaagagaatagagatgagaattattttcctttgtagaaacaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttccaatattttttccctaagagaatagagatgagaattattttcctttgtagaaacag 344
Query: 481 gcagatagatttccataatctaactctataatttaatgtctagattctttagagaggttt 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 343 gcagatagatttccataatctaactctataatttaaagtctagattctttagagaggttt 284
Query: 541 ttgcatgctgtatattaacagataaaagcctcactctgtacaccaaattgttgaaatggg 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttgcatgctgtatattagcagataaaagcctcactctgtacaccaaattgttgaaatggg 224
Query: 601 gcctgtcatagaagaaacagtcg 623
|||||||||||||||||||||||
Sbjct: 223 gcctgtcatagaagaaacagtcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
