BAC Information

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BAC

Clone NameMSMg01-067A11
Chromosome13 (Build37)
Map Location 43,814,427 - 43,814,666
singlet/doubletsinglet
Overlap genenone
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182
Downstream geneLOC100039403, Cd83, LOC100039432, A730030A06, EG637868, EG667157
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067A11.T7 (MSMg01no067_a11.b1)MSMg01-067A11.TJ (MSMg01no067_a11.g1)
ACCAG291863AG291864
length713703
length of high quality
(start - end)
220 (129 - 348)247 (71 - 317)
definitionCHROMAT_FILE: MSMg01no067_a11.b1 PHD_FILE: MSMg01no067_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:01 2005CHROMAT_FILE: MSMg01no067_a11.g1 PHD_FILE: MSMg01no067_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGAACTCGACTCCTTTCTTTTTAAAACAATTTTTTTTTTTTTT
TTTTTTGGAGATAGGGTCTCACCCCGTCCAAGCCTCTAACTTGTTATATA
GCTGAGAGTGACCTTGAACTTCTGACCCTGTGCCTACAAGTCCTGAGATT
ACTAGTACGTGTGCCGCCACACTGGGCTTGCGCACTGTGATTATCCGTAG
CCTTTGTCACCTCTGTGCTACTGGATCTCCGGTCTCAAGTACTCTTTTTT
TTTTTCCCCCTGAAACAGGTTTTCTCTGTATAGCCCTGGCTGTCCTGAAA
ATCACTCTTTTTTTTTCTCCCCCCCCCCCCCCCATAAATCCGCCTGCCTC
TGCCTCCCAAGTGACTGTGATTAAAAGAAAACGCCACCCCTGGCCGGATC
AAGAACTCCTATGAACCTCAATTATCTTCTTTTAAGGTAAATAAATTTAT
TTCAAACATAACATCCTGATTATGGTCTCCCTCCCATCTATGTGTTCGCC
GTATAATCACCAAGTTCCCCTACGATTCCTGATCCTTCTCCATTTGACGT
TTTTTCATACAGATCGCATTAACTATCTATTATAGGTGCAATTACGCTCG
TTTTTTGTTGGGTTTTAATATGATGTATCCGTTTTAGTTCTCTCTTTTGT
CTTAGACGGTCTC
CTCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGTTCCCCAAAATTCTTGAGTTGATTCCTCATGAAAATAAA
TCTTGCAGCTACTTTTCCTCCACTATCTCTTTATAAATAGTATCCATAAA
TTTTCACCTTGGTGCCCTACCATTTCTGTGACTGGCATTGAGGGTGCAGA
GTCAGGATGGAATAGGAAAGCAAAAGATTAAAAAAGAAGGAAGAGAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAAAGAAAGA
AAGAAAGAAAGGAAAAAGAATGATAAAGAAAGAAAAAAGAGTGAGAAAGA
AAGAGAGGAAATATTTTTAGAGACCCCCCCAGAGAGAGAGAGAGAAAGAA
GAAGCTGTGTTTACTCCACAGCTGCACATAAGAAACACTAATTCTCTTCA
AAGAATGTCCCTCTGGTGCTTGGCGCGTGAATCCACGTACCATAACTTGC
GCTGATCTGGTTTTCACGGACACCTCCCGTCTGTAGCCATTGTCTCTGCT
CTGAAGGGACAGGAGATCATTAATCTCGTATGTTCCCCTCCACCTTGAGA
AGAATCTTTCCCTATTGTTGAAAGTTACAATGGAATATTGTGTCTGGTTT
CTATTTGAACCCCAAAAGTTTTGCCTTTGTTTCCCCCTTTGAAGTAGGGT
CTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_a11.g1 MSMg01no067_a11.g1 CHROMAT_FILE:
MSMg01no067_a11.g1 PHD_FILE: MSMg01no067_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:01 2005
         (247 letters)



>mm_chr13_43814227_43814873
          Length = 647

 Score =  389 bits (201), Expect = e-112
 Identities = 231/243 (95%), Gaps = 6/243 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttgagttgattcctcatgaaaataaatcttgcagctacttttcctccactatctct 60
           ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||
Sbjct: 201 attcttgagttgattcctcatgaaaatgaatcttgcagctacttttcctctattatctct 260

                                                                       
Query: 61  ttataaatagtatccataaattttcaccttggtgccctaccatttctgtgactggcattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttataaatagtatccataaattttcaccttggtgccctaccatttctgtgactggcattg 320

                                                                       
Query: 121 agggtgcagagtcaggatggaataggaaagcaaaagattaaaaaagaaggaagagagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggtgcagagtcaggatggaataggaaagcaaaagattaaaaaagaaggaagagagaaa 380

                                                                       
Query: 181 gaaagaaagaaagaaagaaagaaagagagagagagagagag---aaagaaagaaagaaag 237
           ||||||||||||||||||||||| || ||||||| ||| ||   |||||||||  |||||
Sbjct: 381 gaaagaaagaaagaaagaaagaa-gaaagagagaaagaaaggaaaaagaaaga--gaaag 437

              
Query: 238 aaa 240
           |||
Sbjct: 438 aaa 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)