BAC Information

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BAC

Clone NameMSMg01-067D07
Chromosome13 (Build37)
Map Location 108,809,479 - 108,942,797
singlet/doubletdoublet
Overlap gene3021401N23Rik, 2810008M24Rik, Ndufa12l
Upstream geneKif2a, LOC100040322, LOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6
Downstream geneErcc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, Pde4d, EG668144, LOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067D07.T7 (MSMg01no067_d07.b1)MSMg01-067D07.TJ (MSMg01no067_d07.g1)
ACCAG291997AG291998
length682688
length of high quality
(start - end)		314 (47 - 360)284 (79 - 362)
definitionCHROMAT_FILE: MSMg01no067_d07.b1 PHD_FILE: MSMg01no067_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:15 2005CHROMAT_FILE: MSMg01no067_d07.g1 PHD_FILE: MSMg01no067_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,809,479 - 108,809,788)(108,942,516 - 108,942,797)
sequence
NNAAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGTCCG
CGGAATTCATCATGTTCCAAACTGAGAGCGAACAACAGAGGCAGAAGAAA
AGCATTTGCCAAACTTTGCGCACCTCATCAAGGGCAATCTCTGTTGAGTC
TCATGGTTAAAGAGAAAGATCCAGACAACTGTCTATTGTACAAGGGTGAA
GCTGTGGCCTCTCCCATTACATGGTTCTTAAACACATATTCCAACTCCCT
ACGACATTTTGCCCAATATATTGAACCAGCTCATAATTTACTGTCTTCAA
AAGTCTATTTCTTGGAACACCCAGCGTGCCTTGAAATATAAGGTTCTTCT
TGGAATATCTTTATGCATAACACCACCCAATTCTAACTCTAAGAGAAAAA
CCATTTCTGTTCCCATTTACATGAGAAGTGATATGTACAGGAACTTAGAA
CATAGTACAGCAGTGACAGTTTGGATGGAGGGTTCCTTGAATGGTACTTT
CCTTGGGTGATGGATTCCTTGGGTGTTGGATTCCATGAATGGTAGTTTCC
TTGGTTGTTGGCTTCCTTGGAAGGCGGGTTCCTTGAGTGATGCCTTCCTT
GGTTGTTGTCTTCCTTGGAAGGTGGGTTCCTTGAATGTTGCGTTCCTTTG
ACGCTGGAATTCTTGACTGCCGGCTTCCTTGA

NAACTCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGCTGCTGGTTGTCTTTGTCTTT
GAGGGCTTTGACATTTGCTTTAGCTTAGGACAGTAAGGTCAGTATTGATA
CTAACGATCATAGTGTAAACACCGTGTGCTAGACTCGCTTCTAAGCATTT
GCCCCGAGACGCTGCATTGTGGGAGATTTCAAGAATTAAGAAAAGCAATA
GTGTTGCTTCATCAGGACCACTCAGTAACAGAACCCAACCGTGTCATGTG
TTTACAGAGCCCACTCTCCCTGGCATTTAAAACCAGGCAGATAACTGTTA
TCCTCATCTATTTTTTTTTAGAGCGCCCCTCCCCAAAGTCATGTCTGCTG
CTGCCCGAGGTTAAGTGTAAGCTGCTTTACAAAGAATAGACTGCGATGAC
ATTCTTTACAATTCACAGTTGAATGATGACTGGTACTGACAATTAACTAC
CTTCAGATTTATGCGATAGGCTTCATTATTCAACTGTTAGAATAATTTTT
TTTCTATTATAAACTTTATTCTAAATTCCATTTTTTACTTAACGCAGTAG
ATAATATTTTCTGTTTATCAAACACTGTTTATTCACTTTTCACTATATCT
CGTATCCTTTCAATTCCGTTGTCTCTATTTTTATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_d07.b1 MSMg01no067_d07.b1 CHROMAT_FILE:
MSMg01no067_d07.b1 PHD_FILE: MSMg01no067_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:15 2005
         (314 letters)



>mm_chr13_108809274_108809989
          Length = 716

 Score =  545 bits (282), Expect = e-159
 Identities = 303/312 (97%), Gaps = 6/312 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcatcatgttc---caaactgagagcg-aacaacagaggcagaagaaaagcattt 61
           |||||||||||||  |   ||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 206 ggaattcatcatg--ccaacaaactgagagcgaaacaacacaggcagaagaaaagcattt 263

                                                                       
Query: 62  gccaaactttgcgcacctcatcaagggcaatctctgttgagtctcatggttaaagagaaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gccaaactttgcgcacctcatcaagggcaatctctgttgagtctcatggttaaagagaaa 323

                                                                       
Query: 122 gatccagacaactgtctattgtacaagggtgaagctgtggcctctcccattacatggttc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatccagacaactgtctattgtacaagggtgaagctgtggcctctcccattacatggttc 383

                                                                       
Query: 182 ttaaacacatattccaactccctacgacattttgcccaatatattgaaccagctcataat 241
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaaacacacattccaactccctatgacattttgcccaatatattgaaccagctcataat 443

                                                                       
Query: 242 ttactgtcttcaaaagtctatttcttggaacacccagcgtgccttgaaatataaggttct 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttactgtcttcaaaagtctatttcttggaacacccagcgtgccttgaaatataaggttct 503

                       
Query: 302 tcttggaatatc 313
           ||||||||||||
Sbjct: 504 tcttggaatatc 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 716
Length adjustment: 9
Effective length of query: 305
Effective length of database: 707
Effective search space:   215635
Effective search space used:   215635
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no067_d07.g1 MSMg01no067_d07.g1 CHROMAT_FILE:
MSMg01no067_d07.g1 PHD_FILE: MSMg01no067_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:15 2005
         (284 letters)



>mm_chr13_108942316_108942999
          Length = 684

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgctggttgtctttgtctttgagggctttgacatttgctttagcttaggacagtaagg 60
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 482 gctgctggttgtctttgtgtttgagggttttgacatttgctttagcttaggacagtaagg 423

                                                                       
Query: 61  tcagtattgatactaacgatcatagtgtaaacaccgtgtgctagactcgcttctaagcat 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 422 tcagtattgatactaacgatcatagtgtaaacactgtgtgctagactcgcttctaagcat 363

                                                                       
Query: 121 ttgccccgagacgctgcattgtgggagatttcaagaattaagaaaagcaatagtgttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttgccccgagacgctgcattgtgggagatttcaagaattaagaaaagcaatagtgttgct 303

                                                                       
Query: 181 tcatcaggaccactcagtaacagaacccaaccgtgtcatgtgtttacagagcccactctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 302 tcatcaggaccactcagtaacagaacccaaccgtgtcatgtgtttacagagcccattctc 243

                                                     
Query: 241 cctggcatttaaaaccaggcagataactgttatcctcatcta 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cctggcatttaaaaccaggcagataactgttatcctcatcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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