BAC Information

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BAC

Clone NameMSMg01-067G09
Chromosome13 (Build37)
Map Location 88,147,178 - 88,147,376
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675707
Downstream geneLOC667230, EG435375, Edil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067G09.T7 (MSMg01no067_g09.b1)MSMg01-067G09.TJ (MSMg01no067_g09.g1)
ACCAG292142AG292143
length707706
length of high quality
(start - end)
198 (120 - 317)71 (183 - 253)
definitionCHROMAT_FILE: MSMg01no067_g09.b1 PHD_FILE: MSMg01no067_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:29 2005CHROMAT_FILE: MSMg01no067_g09.g1 PHD_FILE: MSMg01no067_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CTCCACCATCTCTGGATGAAGCTCTGCATGAGGACTTGGATGAGTACTGA
GGTAACAACCAAGACATAACCCTTCTCCATATGTAGATGATCTCCTTGTT
ACAACAGAAACTAAAGAGGGTGGCCAAAAAAGTACTCAGAACTTCCTACA
GGCTCTGAAGTATATGATGTATCAGGCATCTTCAAATTCTGCAATAGATA
CTGACTGCTAGTTGGGTATAATAGGTGTTGGGACACCATACATGATCTTG
AAGAATTCCTTACCCCATATAGTGCAAAAGGTAGAATCATCACCCAGTTT
CCTTCTTTTTTCTTTGGCCCCCTCACTCAATCTTTTTCAAGTCCTATTCA
TACTATCTAAAAATCTTACTAACTGACCTGAACTTTGGTGTGTGAATTAT
CTCTGTCTACTATTTTCTGTCCTTTTAACATCTTGGTTAATACTCGTTCT
TTTTTCTGATTTTTACTTCATATTCTTTACTGGCCTAATGTTGATTTCTT
ACTAGACCTTATATCCATGTATACTTTTCGTCAATGTATATAATTTCTTT
ACATTATTATTTGATAACTAGTTTTGAAATTGTTACATTGTTATTTTAGT
AATTATTTTTACTGTACTTTAATTATTCGCGATATTTGTATAGGTTTATA
GCACGTT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCAGGAATTCTAAAATATGTTCATATATTCACAGATAA
GAGTTTTTATCACTTCTCATGCCAGGATTTTTTTTTCAACAGAGACCATC
TGAGAAAAAAAGAAACAATAAAAACTTAATAGTTGAGGCACCAGTCTCTG
ACTGATGTGCATTCGTGAAAATGCCCACACTGATGGCACAAAGACCCTGC
AGAAGAGAGAGTTGAAATGTTGTATGATAGCAAGAACTGAAACTTTGCTG
TGAGATGTGTCTTCTAGTAATGTCTTTACCTACATCCATAGTGTTCCATC
CACTTGACTCCCTTTTTTTTTCCCCCCCCCCACACTATAGGTAAGCTAAT
ATATACATTAAAAGTCCTACCAGCTCAAAACTCTAAAAATTACTACTGAA
CAGTATACATGTGCCATGACCTAGAGTGACAGTTTTCCTAAGCAAGTACA
GACCAACTGATTATAAAATACCTATCATTCCTCCCTGAAAACATTTTTAT
TAAAGATTTCATTCTTGTTAATCTCTTGATAACTCTCAGCTTTGCTATTG
CGTATTGCATATCAATTCCAACTTGCGGTATTTTGCATGGAACAGGTGTA
TAAAAAATGAAAGGCATAAACTATAATCTCTCTTTTCAAACAGTACCCAT
GAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_g09.b1 MSMg01no067_g09.b1 CHROMAT_FILE:
MSMg01no067_g09.b1 PHD_FILE: MSMg01no067_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:29 2005
         (198 letters)



>mm_chr13_88146978_88147576
          Length = 599

 Score =  369 bits (191), Expect = e-107
 Identities = 197/199 (98%), Gaps = 1/199 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccttctcc-atatgtagatgatctccttgttacaacagaaactaaagagggtggccaaa 59
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cccttctccaatatgtagatgatctccttgttacaacagaaactaaagagggtggccaaa 340

                                                                       
Query: 60  aaagtactcagaacttcctacaggctctgaagtatatgatgtatcaggcatcttcaaatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaagtactcagaacttcctacaggctctgaagtatatgatgtatcaggcatcttcaaatt 280

                                                                       
Query: 120 ctgcaatagatactgactgctagttgggtataataggtgttgggacaccatacatgatct 179
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 279 ctgcaatagatactgactgctagttgggtataataggtattgggacaccatacatgatct 220

                              
Query: 180 tgaagaattccttacccca 198
           |||||||||||||||||||
Sbjct: 219 tgaagaattccttacccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 599
Length adjustment: 8
Effective length of query: 190
Effective length of database: 591
Effective search space:   112290
Effective search space used:   112290
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)