Query= MSMg01no067_n09.b1 MSMg01no067_n09.b1 CHROMAT_FILE:
MSMg01no067_n09.b1 PHD_FILE: MSMg01no067_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:03 2005
(570 letters)
>mm_chr13_99210579_99211547
Length = 969
Score = 980 bits (507), Expect = 0.0
Identities = 538/551 (97%), Gaps = 6/551 (1%)
Strand = Plus / Minus
Query: 4 ggaattccagccatgttctcagatacccgccaagtgtgctgaagaatttcagtcttatgc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggaattccagccatgttttcagatacccgccaagtgtgctgaagaatttcagtcttatgc 491
Query: 64 ctgtgtctcaagtcagcactggtcaaatcggctagcacctcaggaggtagcaataggtcc 123
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctgtgtctcgagtcagcactggtcaaatcggctagcacctcaggaggtagcaataggtcc 431
Query: 124 caagggaaataatgctgactgggggacacttctcttagtgattgtgtctttaggaaaatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caagggaaataatgctgactgggggacacttctcttagtgattgtgtctttaggaaaatc 371
Query: 184 ttgtgtccttcaaagcctagtacgcatcatctttcttctggctgccatgaaatgtattcc 243
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 370 ttgtgtccttcaaagcctagtacgcgtcatctttcttctggctgccatgaaaagtattcc 311
Query: 244 tctcactgaggaaaccgactgactccttatataggctggctggctattggatcaggactg 303
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 310 tctcactgaggaaaccgaccgactccttatagaggctggctggctattggatcaggactg 251
Query: 304 gacgctcaatcttctagacttccggcaaacctgctgacgcatttcgctcccgcccctcct 363
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 250 gacgctcaaccttctagacttccgg-aaacctgctgacgcatttcgctcccgcccctcct 192
Query: 364 ctcccctcccctcccctcccct-----tggtaggcagggagccagggcagggccaaagca 418
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 191 ctcccctcccctcccctcccctccccttggtaggcagggagccagggcagggccaaagca 132
Query: 419 gctctcagtgcttcaactgttaactcggatttttccaaaatgtgtttctggttagtttaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gctctcagtgcttcaactgttaactcggatttttccaaaatgtgtttctggttagtttaa 72
Query: 479 aaaaggataaacaagatttaatagctggcaatgaatcacattttttttcctccctaaact 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 aaaaggataaacaagatttaatagctggcaatgaatcacattttttttcctccctaaact 12
Query: 539 ctatttggatc 549
|||||||||||
Sbjct: 11 ctatttggatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 969
Length adjustment: 10
Effective length of query: 560
Effective length of database: 959
Effective search space: 537040
Effective search space used: 537040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_n09.g1 MSMg01no067_n09.g1 CHROMAT_FILE:
MSMg01no067_n09.g1 PHD_FILE: MSMg01no067_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:03 2005
(150 letters)
>mm_chr13_99129348_99129897
Length = 550
Score = 228 bits (118), Expect = 1e-64
Identities = 136/142 (95%), Gaps = 2/142 (1%)
Strand = Plus / Plus
Query: 1 tggacacacacatccttcaagcatttacagtgagcatgcatctcagggaagaggcttctg 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggacacacacatcctccaagcatttacagtgagcatgcatctcagggaagaggcttctg 260
Query: 61 tcacttgaaaattttttttctttttcataaacccacatgtcttcctgtagcccgctgtct 120
|||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct: 261 tcacttgaaattttttttt-tttttcataaacccacatgtcttcctgtagcctgccgtct 319
Query: 121 gggctagtg-cggggggggggg 141
||||||||| ||||||||||||
Sbjct: 320 gggctagtggcggggggggggg 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 550
Length adjustment: 8
Effective length of query: 142
Effective length of database: 542
Effective search space: 76964
Effective search space used: 76964
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
